BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358896
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17890.1 | Symbols: CHS3, DAR4 | DA1-related protein 4 | chr... 366 2e-100
AT5G66610.2 | Symbols: DAR7 | DA1-related protein 7 | chr5:2658... 211 1e-53
AT5G66640.2 | Symbols: DAR3 | DA1-related protein 3 | chr5:2659... 169 7e-41
> AT5G17890.1 | Symbols: CHS3, DAR4 | DA1-related protein 4 | chr5:5916970-5923355
FORWARD LENGTH=5082
Length=5082
Score = 366 bits (198), Expect = 2e-100
Identities = 426/530 (80%), Gaps = 40/530 (8%)
Strand=Plus/Plus
Query 749 AGAAAGAA-GCGCTTAACAAAGCTGAAAAGGAAGAGAAGATTGACAATC------ATTA- 800
||||| || || || || |||||||| |||||||||||||||||||| | || |
Sbjct 4250 AGAAA-AATGCTCTGAATAAAGCTGAGAAGGAAGAGAAGATTGACAAACAGGGGGATCAG 4308
Query 801 TG--GGATGGCTA-CCAGAGGTATTTGCCTGTCTGAAGAGCAGATGGTCACAAGTGTTTC 857
|| ||||| || ||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 4309 TGTCTGATGG-TAGTCAGAGGTATTTGCCTATCTGAAGAGCAGATTGTCACAAGTGTCTC 4367
Query 858 AAAAATTA-AAAGGCAAAGGATGGGGCCGAACAAACAGCTAGTATTAGAGATAGTTCCAA 916
| || | |||| ||||| | ||| || ||| | || |||| | ||| ||
Sbjct 4368 -ACAAGGAGTAAGG---AGGAT---GTTGAATAAGCAG--A-TACTAGATACGGTTACAG 4417
Query 917 AGTCTCAAATGGTTCTTCGAAAGTGCGAGGTCACTGCAATTCTCATCTTATATGGACTTC 976
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 4418 AGTCTCAAAGGGTTGTTCGCAAGTGCGAGGTCACTGCAATTCTCATCTTATATGGGCTTC 4477
Query 977 CTAGGTTCCTAACAGGATATATCTTGGCTCATGAGATGATGCATGCGTGGCTTAGACTCA 1036
||||||| || ||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 4478 CTAGGTTACTCACAGGATATATCTTGGCCCATGAGATGATGCATGCTTATCTTAGACTCA 4537
Query 1037 AGGGTTATAGGAATCT-AGATATGGTTCTCGAAGAAGGATTATGCCAAGTGTTAGGCCAC 1095
| ||||| |||||||| | | |||||||| ||||||||||||||||||||||||||| ||
Sbjct 4538 ATGGTTACAGGAATCTTA-ACATGGTTCTTGAAGAAGGATTATGCCAAGTGTTAGGCTAC 4596
Query 1096 ATGTGGTTGGAGCCTCAGACATACGCCA---ATCCTG--ATA-TAGCAGCAGCAGCTTCT 1149
|||||||||||| ||||||||||| || ||| | | |||| | | |||||
Sbjct 4597 ATGTGGTTGGAGTGTCAGACATACGTTTTTGATACTGCCACAATAGCTTCTTCTTCTTCT 4656
Query 1150 TCTTCTCGCACTCTTCCAGCTACAACCACATCAAAGAAAGGTGAGCCATCTGAATATGAG 1209
||||| ||||||| || | ||||||||||||||||||||| ||| |||||||| | ||||
Sbjct 4657 TCTTCCCGCACTCCTCTATCTACAACCACATCAAAGAAAGTTGACCCATCTGATTTTGAG 4716
Query 1210 AA-ACGGCTCGTGAAGTTT-TGCAAGGATCAGATATATAGAAACAGATGA 1257
|| | |||| || || ||| |||||| |||||||| |||||||||||
Sbjct 4717 AAGA-GGCTGGTAAA-TTTCTGCAAGCATCAGATA----GAAACAGATGA 4760
> AT5G66610.2 | Symbols: DAR7 | DA1-related protein 7 | chr5:26584774-26587782
FORWARD LENGTH=1900
Length=1900
Score = 211 bits (114), Expect = 1e-53
Identities = 240/298 (81%), Gaps = 19/298 (6%)
Strand=Plus/Plus
Query 749 AGAAAGAAGCGCTTAACAAAGCTGAAAAGGAAGAGAAGATTGACAATCATTATGGGATGG 808
||||||||||||| || |||||||| | |||| ||||| |||||||| ||||| | |
Sbjct 1182 AGAAAGAAGCGCTGAAAAAAGCTGAGGCGCAAGAAAAGATCGACAATCAGCATGGGGTTG 1241
Query 809 CT-ACCAGAGGTATTTGCCTGTCTGAAGAGCAGATGGTCACA-AGTGTTTCAAAAATTAA 866
| ||||||||||||||||||||||||| |||||| |||| | |||| || ||||
Sbjct 1242 -TAACCAGAGGTATTTGCCTGTCTGAAGGGCAGATTGTCA-ATAGTG--TC----TTTAA 1293
Query 867 AAGGCAAAGGATGGGGCCGAACAAAC-AGCTAGTATTAGAGATAGTTCCA-AAGTCTCAA 924
|| || || |||||||| ||| | |||||||| || | | | || || |||||
Sbjct 1294 AAAGCCAACCATGGGGCCAAAC-GGCGAGCTAGTA--AG-CTTGGGTACAGAA-CCTCAA 1348
Query 925 ATGGTTCTTCGAAAG-TGCGAGGTCACTGCAATTCTCATCTTATATGGACTTCCTAGGTT 983
| |||| || | | || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1349 AAGGTTGTT-GGTGGATGTGAGGTCACTGCAATTCTCATCCTATATGGACTTCCTAGGTT 1407
Query 984 CCTAACAGGATATATCTTGGCTCATGAGATGATGCATGCGTGGCTTAGACTCAAGGGT 1041
||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1408 ACTAACTGGATATATCTTGGCTCATGAGATGATGCATGCTTGGCTTAGACTCAATGGT 1465
> AT5G66640.2 | Symbols: DAR3 | DA1-related protein 3 | chr5:26599384-26601867
FORWARD LENGTH=1765
Length=1765
Score = 169 bits (91), Expect = 7e-41
Identities = 161/194 (83%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 502 AACTGCTATGTCTGTGAA-AAGAAGATTTCTTTAACTTCGGAAGG--T-AGAAAGTTCAA 557
||||||||||| || || || |||||| || ||| | ||||||| | ||||||||||
Sbjct 710 AACTGCTATGTTTGCCAACAA-AAGATTCCTGTAAATGCGGAAGGTATAAGAAAGTTCAG 768
Query 558 TGTGCATCCGTTCTGGAAGGAAAAATACTGTTTTAGTCATGATGATGATGGAACTCCCAA 617
|| |||||||||||||||||| ||||||||| || ||||||||| ||||||||| ||||
Sbjct 769 TGAGCATCCGTTCTGGAAGGAGAAATACTGTCCTATTCATGATGAGGATGGAACTGCCAA 828
Query 618 GTGTTGCAGCTGTGAAAGATTAGAGTCTTGTGGAACAAAATATGTAAACCTTGAAGATGG 677
||||||||||||||||||||||||| || | ||||| || ||||||| |||| |||
Sbjct 829 GTGTTGCAGCTGTGAAAGATTAGAGCCTAGGGGAACGAACTATGTAATGCTTGGTGATT- 887
Query 678 TC-GATGGCTATGT 690
|| | |||||||||
Sbjct 888 TCCGGTGGCTATGT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5