BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358942
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66120.2 | Symbols: | 3-dehydroquinate synthase, putative |... 2126 0.0
> AT5G66120.2 | Symbols: | 3-dehydroquinate synthase, putative
| chr5:26431376-26433778 REVERSE LENGTH=1598
Length=1598
Score = 2126 bits (1151), Expect = 0.0
Identities = 1262/1314 (96%), Gaps = 13/1314 (1%)
Strand=Plus/Plus
Query 29 TCTC-TTCCAACGTCGCCGCCTCTAAGAATCTCAGCTCCTTTCAAAGCCGTGCCTTTATT 87
|||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 148 TCTCTTTCCAACGTCGCCGCCTCCAAGAATCTCAACTCCTTTCAAAGCCGTGCCTTTATT 207
Query 88 GCTCCTCCACCAACCATTTCTTTCCC----G-----GCAAAGTCTAAACCTGGGGAACTA 138
| |||||||||| |||| |||||| | |||||||||||||||||||||||
Sbjct 208 G---CTCCACCAACTATTTTTTTCCCTGTGGCTTCTGCAAAGTCTAAACCTGGGGAACTT 264
Query 139 TCTTTATCTTCCTCGACTCTTTCCAAGTCTCGTGTGCGCGCCGGTGCTAGCCAGCTCATG 198
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 265 TCTTTATCTTCCACGACTCTTTCCAGGTCTCGTGTGCGCGCCGGTGCTAGCCAGCTCATG 324
Query 199 AACGAACCGCTTAACGATCAACGCTCCTTCTCTTCTCCCACAGTCGTCGAGGTTGATCTG 258
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 325 AACGAACCGCTTAACGATCAACGCTCCATCTCTTCTCCCACTGTCGTCGAGGTTGATCTT 384
Query 259 GGTGACCGGAGTTATCCGATCTATATCGGCGCCGGCTTGCTCGATCACTCTGAACTTCTT 318
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 385 GGTGACCGGAGTTATCCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTT 444
Query 319 CAAAGGCATGTTCATGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCTCTC 378
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAAAGGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCTCTC 504
Query 379 TACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCCAACGTCACTGTGGAGAGT 438
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 505 TACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCAAACGTGACAGTGGAAAGT 564
Query 439 GTTATTTTGCCTGATGGAGAGAAATACAAGGACATGGATACTCTCATGAAAGTCTTCGAC 498
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 565 GTAATTTTGCCTGATGGAGAGAAATACAAAGACATGGATACTCTCATGAAAGTCTTCGAC 624
Query 499 AAGGCCATTGAGTCTCGCCTAGATAGACGATGTACATTTGTTGCCCTTGGAGGCGGTGTG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 AAGGCCATTGAGTCTCGCCTAGATAGACGATGTACATTTGTTGCCCTTGGAGGCGGTGTG 684
Query 559 ATAGGAGATATGTGTGGATATGCTGCTGCATCTTACCTGCGTGGTGTTAATTTCATCCAA 618
||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 685 ATAGGCGATATGTGTGGATATGCTGCTGCATCGTACCTACGTGGTGTCAATTTCATCCAA 744
Query 619 ATTCCTACCACTGTTATGGCACAGGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAAT 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATTCCTACCACTGTTATGGCACAGGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAAT 804
Query 679 CATCGTCTTGGAAAGAATTTGATCGGTGCATTTTACCAACCACAGTGTGTGCTAGTAGAC 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 CATCGTCTTGGAAAGAATTTGATCGGTGCATTTTACCAACCACAGTGTGTGCTAGTAGAC 864
Query 739 ACTGACACATTGAACACATTGCCAGATAGGGAGATGGCATCAGGCCTCGCTGAAGTGATC 798
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 865 ACTGACACGTTGAACACATTGCCAGATAGGGAGATGGCATCAGGCCTAGCTGAAGTGATC 924
Query 799 AAGTACGGGCTTATCAGGGATGCCGAGTTCTTTGAATGGCAGGAGAAGAACATCGAGGCA 858
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 925 AAGTACGGGCTTATCAGGGATGCCGAGTTCTTTGAATGGCAGGAGAAGAACATTGAGGCA 984
Query 859 TTGCTGGCAAGGGATCCAGCTGCATTAGCTTTTGCTATAAAGAGATCATGTGAAAACAAG 918
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 985 TTGCTGGCAAGGGATCCAGCTGCATTAGCTTTTGCTATAAAGCGATCATGTGAAAACAAG 1044
Query 919 GCAGACGTTGTGTCCCAAGATGAGAAAGAAAGCGGCTTGCGAGCAACCCTAAATTTGGGT 978
||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1045 GCAGACGTTGTATCACAAGATGAGAAAGAAAGCGGCTTGCGAGCAACCTTAAATTTGGGT 1104
Query 979 CATACATTTGGCCATGCCATAGAAACTGGCTTTGGTTATGGAGAGTGGCTCCATGGAGAA 1038
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CATACCTTTGGCCATGCCATAGAAACTGGCTTTGGTTATGGAGAGTGGCTCCATGGAGAA 1164
Query 1039 GCTGTTGCAGCTGGCACGGTAATGGCAGTGGACATGTCATATCGTCTTGGTTGGATAGAT 1098
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1165 GCTGTTGCAGCTGGCACGGTAATGGCAGTGGACATGTCATATCGTCTTGGTTGGATCGAT 1224
Query 1099 GAATCGATCGTTAAGAGAGTGAACAAGATCCTAGAACGGGCGAAATTGCCTACAACGCCT 1158
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1225 GAATCGATTGTTAAGAGAGTGAACAAGATCCTAGTACGGGCGAAATTGCCTACAACTCCG 1284
Query 1159 CCAGAGAGCATGACCGTGAGCATGTTCAAATCCATAATGGCGGTGGACAAGAAAGTGGCA 1218
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1285 CCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGGTGGACAAGAAAGTGGCA 1344
Query 1219 GATGGACTGCTGAGGCTGATTCTTCTCAAAGGCCCGCTGGGAAACTGCGTGTTCACGGGA 1278
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1345 GATGGACTGCTGAGGCTGATTCTTCTCAAAGGCCCGCTGGGAAACTGCGTGTTCACTGGA 1404
Query 1279 GATTATGATCGGGAAGCGTTGGATGCCACGCTTCGTGCATTCTCCAAATCCTGA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 GATTATGATCGGGAAGCGTTGGATGCCACGCTTCGTGCATTCTCCAAATCCTGA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5