BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358962

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13490.1 | Symbols:  | RING/U-box superfamily protein | chr4...   342    2e-93


> AT4G13490.1 | Symbols:  | RING/U-box superfamily protein | chr4:7839137-7840284 
REVERSE LENGTH=681
Length=681

 Score =  342 bits (185),  Expect = 2e-93
 Identities = 228/248 (92%), Gaps = 5/248 (2%)
 Strand=Plus/Plus

Query  1    ATGAGTTTAGAGAGTGATATTAAAGAAAGCAAACGAGTCGTTGAACCAGTTGATGATGAA  60
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| 
Sbjct  1    ATGAGTTTAGAGAGTGATATCAAAGAAAGCAAACGAGTCGTTGAACCATTTGATGATGAC  60

Query  61   GACTGTGCGGtttttttCGAGCCATTGGCTAATGATGCT-A--AACGAACTGTGGTTAAT  117
            || |||||||||| ||| ||||| ||||||||||||||| |  |||||||||| ||||| 
Sbjct  61   GATTGTGCGGTTTGTTTGGAGCCGTTGGCTAATGATGCTGACGAACGAACTGTTGTTAAG  120

Query  118  CTTCAATGTAGCCACAGGTTTCACTTAGATTGTGTTGGTTCATTCTTCAATATAAAGAAC  177
            |||| ||||||||||| |||||||||||||||||||||||||| ||| || |||||||||
Sbjct  121  CTTCGATGTAGCCACAAGTTTCACTTAGATTGTGTTGGTTCATCCTTTAACATAAAGAAC  180

Query  178  AAGATGGAATGTCCATGTTGTAGACAGATTGAAAA-GGGAAAATGGTTGTTCGCAAAACC  236
            ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct  181  AAGATGGAATGTCCATGTTGTAGACAGATTGAAAAAGGGAAA-TGGTTGTTCGCAGAACC  239

Query  237  TGTAGATC  244
            ||||||||
Sbjct  240  TGTAGATC  247


 Score = 99.0 bits (53),  Expect = 5e-20
 Identities = 91/107 (85%), Gaps = 12/107 (11%)
 Strand=Plus/Plus

Query  567  TTATGGCTGTGAAAGAAGTGGTGGGGGAGGCGGTGAAAACA---GCGGTGGGGAAGCGGT  623
            ||||||| |||||||||| ||||||| ||||||||||||||   | ||||||||||||||
Sbjct  555  TTATGGCCGTGAAAGAAGCGGTGGGGAAGGCGGTGAAAACAGTTGTGGTGGGGAAGCGGT  614

Query  624  GGCGGA-G--G--C----GGGGGAAGCAGCAGAAGGGGCGGAAATGA  661
            |||||| |  |  |    |||||||||||||||||||||||||||||
Sbjct  615  GGCGGAGGAAGATCAGGTGGGGGAAGCAGCAGAAGGGGCGGAAATGA  661



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32501493109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5