BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358968

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13440.1 | Symbols:  | Calcium-binding EF-hand family protei...   723    0.0  


> AT4G13440.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr4:7810215-7810679 FORWARD LENGTH=465
Length=465

 Score =  723 bits (391),  Expect = 0.0
 Identities = 433/454 (95%), Gaps = 0/454 (0%)
 Strand=Plus/Plus

Query  1    ATGGATGAGCTCCACGAAGCCGCGATTGCTTATTACAACAATGGCTCCATGGAACAGCAG  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  1    ATGGATGAGCTCCACGAAGCCGCGATTGCTTATTACAACAATGGCTCCATGGAACAACAA  60

Query  61   AATTTGTCGTGGCAGTTTTTCCGGGCAATGGACGTTAACGGAGACGGCCGTGTCAGCCTT  120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AATTTGTCGTGGCAGTTTTTCCGGGCAATGGATGTTAACGGAGACGGCCGTGTCAGCCTT  120

Query  121  CAAGAGTACACCGAGTTCTTGCGTCAAACCGCTGGTTTAGCTTGGGTCCATCCTGAGATG  180
            ||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  121  CAAGAATACACCGACTTCTTGCGTCAAACCGCTGGTTTAGCTTGGATCCATCCCGAGATG  180

Query  181  TTTCGCGAGCTAGACCGAAATGGAGATGGTCAGCTCGACTTTTGGGAGGTCTTGACTCTT  240
            ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  181  TTTCGGGAGCTCGACCGAAATGGAGATGGTCAGCTTGACTTTTGGGAGGTCTTGACGCTT  240

Query  241  TACTATGTGGCTCGGACCAGGACCATTAGCTGCCGCACGTGCCTCCGGATTCTCAATGGC  300
            ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||| 
Sbjct  241  TACTACGTGGCTCGGACCCGGACCATTAACTGCCGCACATGCCTCCGGATTCTCAATGGT  300

Query  301  CTATACTTCACGTGTGTCACATGCTTTGAGTCTCCATGTGGCAACACGTTTGATCTTTGC  360
            ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  301  CTATACTTCACGTGTGTCACATGCTTTGAATCTTCATGTGGCAACACGTTTGATCTTTGC  360

Query  361  GTCAAGTGTTATATGCGTCGGACGTATTGTCATCCACATCGTCTCTTCTTGGATAGTTAT  420
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  361  GTCAAGTGTTATATGCGTCGGACGTATTGTCATCCGCATCGTCTCTTTTTGGATAGTTAT  420

Query  421  GTCTTATTACGATCTAGACGTATCCACCATCCTT  454
            |||||||||||||| |||||||||||||||||||
Sbjct  421  GTCTTATTACGATCAAGACGTATCCACCATCCTT  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5