BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358974
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13420.1 | Symbols: HAK5, ATHAK5 | high affinity K+ transpor... 2673 0.0
> AT4G13420.1 | Symbols: HAK5, ATHAK5 | high affinity K+ transporter
5 | chr4:7796850-7802251 REVERSE LENGTH=2623
Length=2623
Score = 2673 bits (1447), Expect = 0.0
Identities = 1780/1943 (92%), Gaps = 13/1943 (1%)
Strand=Plus/Plus
Query 1 ATGGGACTAATTCCAAACCAAGAACCAGAAGATAG-AGAGCTCTCAAACTATACACTTGA 59
||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||
Sbjct 501 ATGGGACTAATTCCAAACCAAGAACCAGAAGAT-GTAGAACTCTCCAACTATACACTTGA 559
Query 60 ACATCCAACCAAACAGCTCACAAGAGCCCATATGATCAAAGAGAAGCTAGAGAACTCTAA 119
|| |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 560 ACTTCCAACCACACAGCTCAGAAGAGCCCATATGATCAAAGAGAAGCTCGAGAACTCTAA 619
Query 120 ATTCTCTAAGATCCTACTCTTCCTCGTCACTATTATGGGCACTTCCATGGTCATTGGTGA 179
|||| |||||||| | |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 620 ATTCGCTAAGATCATTCTCTTCCTAGTCACTATTATGGGAACTTCCATGGTCATTGGTGA 679
Query 180 TGGAATCCTTACTCCTTCTATCTCAGTACTTTCGGCAGTGAGTGGAATCAAACCGCTCGG 239
|||||||||||||||||| |||||||||||||| ||||| |||||||||||| | |||||
Sbjct 680 TGGAATCCTTACTCCTTCCATCTCAGTACTTTCAGCAGTAAGTGGAATCAAATCTCTCGG 739
Query 240 GCAAGACACGGTGGTTGGTGTTTCGGTTGCAATCTTGATTATTCTGTTTGCATTCCAACG 299
||| |||||||||| |||||||||||||||||||||||| |||| || ||||| || ||
Sbjct 740 CCAAAACACGGTGGTGGGTGTTTCGGTTGCAATCTTGATTGTTCTATTCGCATTTCAGCG 799
Query 300 GTTTGGAACCGACAAAGTCGGATTCTCATTCGCTCCGATCATCCTTGTATGGTTCACATT 359
|||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 800 GTTTGGCACCGATAAAGTTGGATTCTCATTCGCCCCGATCATCCTCGTATGGTTCACATT 859
Query 360 TCTTACCGGAATCGGCCTCTTCAATCTGTTCAAACATGACATTACCGTCTTAAAGGCACT 419
||| | |||||| || ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 860 TCTGATCGGAATTGGTCTCTTTAATCTGTTCAAGCATGACATTACCGTCTTAAAGGCACT 919
Query 420 TAATCCACTCTATATTATTTACTACTTTAGAAGAACTGGTAGAAAGGGATGGATTTCTCT 479
||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 920 TAATCCACTCTATATCATTTACTACTTTAGAAGAACTGGTAGACAGGGTTGGATTTCCCT 979
Query 480 AGGAGGTGTTTTCCTCTGCATCACTGGGACGGAAGCCATGTTTGCTGATCTAGGTCACTT 539
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 980 CGGAGGTGTTTTCCTCTGCATCACTGGGACGGAGGCAATGTTTGCTGATCTAGGTCACTT 1039
Query 540 CAGTGTCCGAGCCATACAGATTAGTTTCTCATGTGTGGCATATCCGGCTCTAGTAACAAT 599
|||||| ||||| |||||||||||||||||||||| |||||||| ||| ||||||| ||
Sbjct 1040 CAGTGTTCGAGCTGTACAGATTAGTTTCTCATGTGTCGCATATCCTGCTTTAGTAACGAT 1099
Query 600 ATATTGCGGGCAGGCTGCATACCTTACCAAACATACTTCA-AACGTTTCAAATACTTTCT 658
|||||||||||||||||| ||||| || |||||||||| | || || |||||||||||||
Sbjct 1100 ATATTGCGGGCAGGCTGCGTACCTAACTAAACATACTT-ACAATGTGTCAAATACTTTCT 1158
Query 659 ACGACTCAATCCCAGATCCGCTATACTGGCCAACATTTGTGGTCGCGGTCGCAGCATCAA 718
||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 1159 ACGACTCAATCCCTGATCCGTTATACTGGCCAACATTTGTGGTAGCGGTGGCAGCATCAA 1218
Query 719 TCATCGCGAGCCAAGCTATGATATCAGGAGCCTTCTCAGTCATCTCGCAGTCTCTACGTA 778
||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 1219 TCATCGCGAGCCAAGCTATGATATCGGGCGCCTTTTCAGTCATCTCGCAATCTCTACGTA 1278
Query 779 TGGGTTGTTTCCCTCGAGTGAAGGTGGTTCACACCTCGGCTAAGTACGAGGGACAAGTCT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TGGGTTGTTTCCCTCGAGTGAAGGTGGTTCACACCTCGGCTAAGTACGAGGGACAAGTCT 1338
Query 839 ACATCCCCGAGATCAACTACTTCCTCATGCTTGCTTGCATTGCTGTTACCCTCGCCTTCA 898
| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |
Sbjct 1339 ATATCCCGGAGATCAACTACTTGCTCATGCTTGCATGCATCGCTGTTACCCTTGCCTTTA 1398
Query 899 GAACCACTGAGAAGATTGGTCACGCTTATGGGATCGCTGTCGTAACCGTCATGGTCATCA 958
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1399 GAACTACTGAGAAGATTGGTCACGCTTATGGGATCGCCGTTGTAACCGTCATGGTCATCA 1458
Query 959 CAACCATAATGGTGACTCTCATAATGCTGGTTATCTGGAAAACCAACATAGTGTGGATCG 1018
||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |
Sbjct 1459 CAACCTTAATGGTGACTCTCATAATGTTGGTTATCTGGAAGACCAATATAGTGTGGATTG 1518
Query 1019 CTA-CGTTCTTGGTCTTGTTTGGTTCTATAGAGACGTTATACCTCTCGTCAGTCATGTAC 1077
||| | ||||||||| | ||||| || ||||||| ||||||||| || || |||||||||
Sbjct 1519 CTATC-TTCTTGGTCGTCTTTGGCTCCATAGAGATGTTATACCTATCTTCGGTCATGTAC 1577
Query 1078 AAGTTCACGAGCGGTGGGTATTTACCACTTGCGATAACGGTAGTTTTGATGGCAATGATG 1137
||||| || ||||||||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 1578 AAGTTTACAAGCGGTGGGTATTTACCACTTACGATAACGGTCGTTTTGATGGCGATGATG 1637
Query 1138 GCGATTTGGCAATACGTTCACATCCTCAAGTACCGGTACGAGATGAGGGAGAAAATTTCT 1197
|||||||||||||| ||||| ||||||| |||||||||||| |||||||||| || |||
Sbjct 1638 GCGATTTGGCAATATGTTCATGTCCTCAAATACCGGTACGAGCTGAGGGAGAAGATCTCT 1697
Query 1198 CGTGAAAATGCTATACAAATGGCTACAAGTCCTGACGTAAACCGGGTTCCAGGGATTGGT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 CGTGAAAATGCTATACAAATGGCTACAAGTCCTGACGTAAACCGGGTTCCAGGGATTGGT 1757
Query 1258 CTATTCTACACGGAGCTTGTTAACGGTATAACTCCATTGTTCTCTCATTATATCTCGAAT 1317
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1758 CTTTTCTACACGGAGCTTGTTAACGGTATAACTCCATTGTTCTCTCACTATATATCAAAT 1817
Query 1318 CTTTCGTCCGTCCACTCGGTTTTTGTCTTGATATCGATTAAGACACTTCCCGTGAACCAA 1377
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |
Sbjct 1818 CTTTCGTCCGTCCACTCGGTGTTTGTATTGATATCGATCAAGACACTTCCCGTGAACCGA 1877
Query 1378 GTGACGTCATCAGAGCGGTTCTTTTTCCGTTACGTGGGGCCAAAAGATTCTGGAATGTTT 1437
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1878 GTGACGTCATCAGAGCGGTTCTTTTTCCGTTACGTGGGGCCAAAGGATTCCGGGATGTTT 1937
Query 1438 CGGTGTGTTGTGAGGTATGGTTACAAAGAAGACATTGAGGAGCCTGATGAGTTCGAGCGT 1497
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1938 AGGTGTGTTGTGAGATATGGTTACAAGGAAGACATTGAGGAGCCTGATGAGTTCGAGCGT 1997
Query 1498 CATTTTGTTCATTGCTTAAAGGAATTCATTCATGACGAGCACTTAATGTCCGGA-GACGG 1556
||||||||| ||| ||||||||||||||||||| |||||||||| ||||| ||| || ||
Sbjct 1998 CATTTTGTTTATTACTTAAAGGAATTCATTCATCACGAGCACTTCATGTCTGGAGGA-GG 2056
Query 1557 -GGGAGACTTGGACGAGATGGGCAAAGAAGAGGAACCAAATGCTGAGACCACACTTGTGC 1615
||| || ||||||||| || ||||||||||||||||||||||||||| ||| ||||||
Sbjct 2057 AGGG-GAGGTGGACGAGACGGACAAAGAAGAGGAACCAAATGCTGAGACAACAGTTGTGC 2115
Query 1616 CTTCCTCTAAGTCTGTCCCAGCTTCCTCGGGTCGGATCGGTTCCGCGTATTCATCTTCGC 1675
|||| ||||| | ||| || |||| ||||| |||||||| ||||| |||||||||||
Sbjct 2116 CTTCGTCTAATTATGT-CC--CTTCATCGGGGCGGATCGGGTCCGCCCATTCATCTTCGT 2172
Query 1676 CGGAAAAGATTAGGTCGGGCAGGTTCGTGCAGGTGCAGTCTGTGGAAGATCAAACGGAGC 1735
| || |||||||||||||| ||| |||||||||| || || ||||| |||||||| |||
Sbjct 2173 CAGACAAGATTAGGTCGGGAAGGGTCGTGCAGGTTCAATCCGTGGAGGATCAAACAGAGT 2232
Query 1736 TGGTGGAGAAAGCAAGAGAGAAAGGAATGGTTTATCTAATGGGAGAGACGGAGATGACGG 1795
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 2233 TGGTGGAGAAAGCGAGAGAGAAAGGGATGGTTTATCTAATGGGAGAGACCGAGATTACGG 2292
Query 1796 CGGCGAAAGATTCTTCTTTGTTTAAGAAGTTTATAGTGAACCATGCTTACAATTTCTTGA 1855
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2293 CAGAGAAAGAGTCTTCTTTGTTTAAGAAGTTTATAGTGAACCATGCTTACAATTTCTTGA 2352
Query 1856 AGAAGAATTGTCGGGAAGGAGACAAAGCACTTGCGATTCCTAGGTCAAAGCTTCTCAAGG 1915
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2353 AGAAGAATTGTCGGGAAGGAGACAAAGCACTTGCGATTCCTAGGTCGAAGCTTCTCAAGG 2412
Query 1916 TTGGCATGACTTATGAGTTATAA 1938
|||||||||| ||||||||||||
Sbjct 2413 TTGGCATGACCTATGAGTTATAA 2435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95983442040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5