BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358984
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13350.1 | Symbols: NIG | NSP (nuclear shuttle protein)-inte... 2817 0.0
> AT4G13350.1 | Symbols: NIG | NSP (nuclear shuttle protein)-interacting
GTPase | chr4:7769770-7773666 REVERSE LENGTH=2339
Length=2339
Score = 2817 bits (1525), Expect = 0.0
Identities = 1716/1810 (95%), Gaps = 5/1810 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATCGAGTTAAAGAAGACGAGAAGAACGAGAAGATTATTAGGAGTCTTCTCAAA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 131 ATGGCGGGTCGAGTTAAAGAAGACGAGAAGAACGAGAAGATTATTAGGAGTCTTCTTAAA 190
Query 61 CTTCCTGAGAATAAGAGATGTATAAACTGTAACAGCCTTGGACCACAATATGTTTGTACT 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 191 CTTCCTGAGAATAAGAGGTGTATAAACTGTAACAGCCTTGGACCACAATATGTTTGCACT 250
Query 121 ACTTTCTGGACTTTTGTTTGTACCAACTGCAGTGGAATACACCGTGAGTTTACACACCGT 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 251 ACTTTCTGGACTTTTGTTTGTACCAACTGCAGTGGAATACATCGTGAGTTTACACATCGT 310
Query 181 GTTAAATCGATATCAATGGCGAAATTTACCTCACAAGAAGTTACTGCTTTAAAAGAAGGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 311 GTTAAATCGATATCAATGGCGAAATTTACCTCACAAGAAGTTACTGCTTTGAAAGAAGGT 370
Query 241 GGAAATAAGCATGCTAAGGATATTTATTTTAAAGGACTGGATCAACAGAGGCAGTCAGTG 300
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 371 GGAAATCAGCATGCTAAGGATATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTG 430
Query 301 CCTGACGGAAGTAATGTTGAGCGGTTAAGGGACTTCATCAGACATGCGTATGTAAATAAA 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 431 CCTGACGGAAGTAATGTTGAGCGGTTAAGGGACTTCATCAGACATGTGTATGTAAATAAA 490
Query 361 AGGTATTCGAATGAGAAGAATGATGACAAGTCTCCAAGTGAGACACGTAGTTCTAGTGGC 420
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 491 AGGTATACGAATGAGAAGAATGATGATAAGTCTCCAAGTGAGACACGTAGTTCTAGTGGT 550
Query 421 TCTCGAAGTCCACCATATGAAGATGTATATGACCGTCGTTACAGCGACAGATCAAGTCCT 480
||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 551 TCTCGGAGTCCACCTTATGAAGATGGATATGACCGTCGTTACGGCGACAGATCAAGTCCT 610
Query 481 GGTGGGAGAAGTCCAGGGTTTGAGCCAGGTAGCAGGAATGCTGTTAATAACAGGAAAAGC 540
|||||||||||||||||||| ||| | ||||| |||||||||||||||||||| ||||||
Sbjct 611 GGTGGGAGAAGTCCAGGGTTCGAGACGGGTAGTAGGAATGCTGTTAATAACAGAAAAAGC 670
Query 541 CCTGCTCGTCCTGAGATCCTGAATGATTGGCGCAGAGAAGATAGATTTGGGGGTA-AAAA 599
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 671 CCTGCTCGTCCTGAGATCCTGAATGATTGGCGCAGAGAGGATAGGTTTGGGGGTAGAAAA 730
Query 600 GACATCAGAAGAGGGCTCCCAGTCACCTGAGCAAGTAAAAGACTTGGGCTCAGCTAGCCC 659
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 731 -ACATCAGAAGAGGGCTCCCAGTCACCTGAGCAAGTAAAAGACTTGGGTTCAGCTAGCCC 789
Query 660 TCCTGTAGCTCGACCTGTTAGGGAAATTTTAGGTGACAGTGTTATTCCTCTTCGCGTGGG 719
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 790 TCCTGTAGCTCGACCTGTTAGGGAAATTTTGGGTGACAGTGTTATTCCTCTTCGTGTGGG 849
Query 720 AGAGCCTCCAAAACCCCCTGTCAGCCGAAATACCGATGCTTCAACACATGCAAAGTCAGC 779
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 850 AGAGCCTCCAAAACCCCCTGTCAGTAGAAATACCGATGCTTCAGCACATGCAAAGTCAGG 909
Query 780 TACACCATTGAGTAGTTTAATGGCCACAAATGAGAAGCCACCAGAAGCAAAGCTAGAGAC 839
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 910 TACATCATTGAGTAGTTTAATGTCCACAAATGAGAAGCCACCAGAAGTGAAGCTGGAGAC 969
Query 840 TGCTTTAAGCCTGATTGATTTTGATACTGATTTTGAACCTCCTGCTCCATCTGTTGCAAT 899
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 970 TGCTTTAAGCCTGATTGATTTTGATACTGATTTTGAAACTCCTGCTCCATCTGTTGCAAT 1029
Query 900 ACAAGCA-C-C-ATCGACCACACCTCAGACTGTTCCACAGCCAGCAAGTTCATCTAATGA 956
|||||| | | |||||||||| ||||| ||| |||||||||| ||| ||||||||||||
Sbjct 1030 TCAAGCACCACTATCGACCACATCTCAGCCTGCTCCACAGCCAACAACTTCATCTAATGA 1089
Query 957 TAACTGGGCGTCTTTCGATGCTGCACCCAGTGCCCCTAGTTTAAATGTGTCGCAACCACC 1016
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1090 TAACTGGGCATCTTTCGATGCTGCACCCAGTGCCCCTAGTTTAAATGTATCGCAACCACC 1149
Query 1017 ACCCAATGGAAACACACTGGATTCAATTCTCTCTCAGTTGGCAGTGAATTCTTCTGTGCC 1076
||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||
Sbjct 1150 ACCCAGTGGAAACACACTGGATTCACTTCTCTCCCAGTTGGCAGTGACTTCTTCTGTGCC 1209
Query 1077 GGGTCAGACGTCTATACCATCTAACGGACCTGTGCATCTTGGTCATTCCACGTCACAAAT 1136
|||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1210 AGGTCAGGCGTCTACACCATCTAACGGACCTGTGAATCTTGGTCATTCCACGTCACAAAT 1269
Query 1137 CTTTGCACCATTTCCGAATGAGCATTCGAGTGAACAGCCATGGAACACAGAACTTGCATC 1196
||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1270 CTTTGCACCCTTTCAGAATGAGCATTCGAGTGAACAGCCATGGAACACAGCACTTGCATC 1329
Query 1197 TAATGTACATAGGTCAATGAGTGCACCGTCATTACAACCTCTTCATGGAGTCCCTTCTGG 1256
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1330 TAATGTACAGAGGTCAATGAGTGCACCGTCATTGCAACCTCTTCAAGGAGTCCCTTCTGG 1389
Query 1257 TGGCCAGCAGTCTTCTGAAGTTAAACCTTCCGGAAGATCAGAATTACCTGCGGATTTATT 1316
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1390 TGGCCTGCAGTCTTCTGAAGTTAAACCTTCGGGAAGATCAGAATTACCTGCGGATTTATT 1449
Query 1317 CGCTGTAACCTACCCATCATACCATGCACCAGCGCCTGGGTGGCAAGCTGGTCCACCTCA 1376
|||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1450 CGCTGTAAACTACCCATCATACCATGCACCAGTGCCTGGATGGCAAGCTGGTCCACCTCA 1509
Query 1377 TGCTATGCATTATGGCATGCAGCAGTATAATAACCCTGTGCCATACCAGAATGTTCCGCA 1436
||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1510 TGCTATGCACTATGGCATGCAGCAGTATAATAACCCCGTGCCGTATCAGAATGTTCCGCA 1569
Query 1437 ACCAGCCAAGTCAATGAACCCTTTTGACTTCAGCCCTGGGCCTCCATCACAAACGCAAAC 1496
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1570 GCCAGGCAAGTCAATGAACCCTTTTGACTTCAGCCCTGGGCCGCCATCACAAACACAAAC 1629
Query 1497 GGAAAATCTGTTCCCTTCCATGGCTCCTCTGCAAGGTGCATTACCTCCTTCAGGCATGAT 1556
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 GGAAAATATGTTCCCTTCCATGGCTCCTCTGCAAGGTGCATTACCTCCTTCAGGCATGAT 1689
Query 1557 GCCTTCTCAAGGAGTACACAACCAATTCAATATACCTTCTCAAGTCTCAGCCCATCCATC 1616
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1690 GCCTTCTCAAGGAGTACACAATCAATTCAATATACCTTCTCAAGGCTCAGCCCATCCATC 1749
Query 1617 GGCAATGCCACCAAGGTACATGTCTTCTCAATTACCAGGAAGCATGCCACCTAGCAATGT 1676
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1750 TGCAATGCCACCAAGGTACATGCCTTCTCAAATACCAGGAAGCATGCCACCTAGCAATGT 1809
Query 1677 AAACCCAATTGGCGGCATGAACGCTTCATATGACGCCCAACAAACATATCAAAATTTCGG 1736
|||||||||||||| ||| ||| | ||||||||| | |||||||||||||||||||| ||
Sbjct 1810 AAACCCAATTGGCGACATAAACACGTCATATGACACTCAACAAACATATCAAAATTTTGG 1869
Query 1737 AAGCTCGTTTGCTGCTGCAGTTCCTTTGAACCCACCTTCTTTCCAATCAGGAGGAAACCC 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 AAGCTCGTTTGCTGCTGCAGTTCCTTTGAACCCACCTTCTTTCCAATCAGGAGGAAACCC 1929
Query 1797 GTTTGGGTAA 1806
|||||||||
Sbjct 1930 ATTTGGGTAA 1939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89356970100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5