BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358998
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09110.1 | Symbols: | Protein of unknown function (DUF674) ... 213 1e-54
> AT3G09110.1 | Symbols: | Protein of unknown function (DUF674)
| chr3:2794165-2795991 REVERSE LENGTH=1666
Length=1666
Score = 213 bits (115), Expect = 1e-54
Identities = 185/218 (85%), Gaps = 7/218 (3%)
Strand=Plus/Plus
Query 142 TGTAGTTGTGGCAGCTCGATG-ACTCGCGAGTTTCAGTTTGAAGAAGGAGAGGAAGTTGA 200
||| ||||||| ||||| ||| || || ||| ||| | |||||| | | || ||| |||
Sbjct 443 TGTCGTTGTGGAAGCTCTATGCAC-CGTGAGATTCCGGTTGAAG-A--ACAGCAAGCTGA 498
Query 201 TGGAGTATTTCTCAGCTGTAGAACATCGTTTATCATCACCGATGATCTCAATGTGGCATT 260
||||||||||| |||||| |||||||| ||| | || || ||||||||||| ||||||||
Sbjct 499 TGGAGTATTTCCCAGCTGCAGAACATCATTTGTTATTACGGATGATCTCAAAGTGGCATT 558
Query 261 GAACTCTATGGGTCTTGTACTGAATGTTCTCAATGATCATGGCTA-TGATGGTTTTGATA 319
|||||||||||||||||| ||||||| ||||||||| ||| || | |||||||||||
Sbjct 559 GAACTCTATGGGTCTTGTTTTGAATGTCCTCAATGATTTTGGTTACT-CTGGTTTTGATA 617
Query 320 AACTGCAAGAAATGCTTATTGATGTTGGTTTTGAAGAG 357
| ||||||||||||||||||||||||||||||||||||
Sbjct 618 AGCTGCAAGAAATGCTTATTGATGTTGGTTTTGAAGAG 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18548799381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5