BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359005
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13266.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 854 0.0
> AT4G13266.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G13950.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr4:7705761-7706862 REVERSE LENGTH=966
Length=966
Score = 854 bits (462), Expect = 0.0
Identities = 586/646 (91%), Gaps = 7/646 (1%)
Strand=Plus/Plus
Query 14 CTCGAGAAGAACATCC-TTACAATGATCCGTCTGCTTGGTTTGTCCGTTACCTTGACCAC 72
|||||||||||||||| || ||| ||| | ||||| |||||| | || ||||||||||||
Sbjct 75 CTCGAGAAGAACATCCATTCCAA-GATTCATCTGCATGGTTTCTACGGTACCTTGACCAC 133
Query 73 CAAGGTGATTGGCTTGAAAAAACCAGAGGAAACCTTGTCGTTGCAGCAACCGTCATAGCT 132
||||| || |||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct 134 CAAGGCGACTGGCTTGAAAAAACTAGGGGAAACCTGGTCGTTGCTGCAACAGTCATAGCT 193
Query 133 GCAATGAGCTTTGGGGTAATGGTGAACCCTCCAGGCGGCGTGCGGCAAAGTGAAGACTGT 192
|||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||
Sbjct 194 GCAATGAGCTTTGGGGTAATGGTGAACCCTCCAGGCGGTGTTTGGCAGAGTGAAGATTGT 253
Query 193 TCCCCCAAAGGTCAAAC--C-GTTCAAACCAGAACTTGTGAGGGGAAGGTTGGAACTTCG 249
||| ||||||| ||||| | |||||||||||||||||||||||||| |||| ||||||
Sbjct 254 TCCTCCAAAGGCCAAACTACTTTTCAAACCAGAACTTGTGAGGGGAAGCTTGGGACTTCG 313
Query 250 ATACTAGAGCACCATCCTACAAAGCGTTTCTTCTATCTTGGTATGGTAATAAGCAATTTG 309
|||||||||||| ||||| |||||||| ||||||||||||| ||||| || |||||||||
Sbjct 314 ATACTAGAGCACAATCCTTCAAAGCGTATCTTCTATCTTGGCATGGTCATTAGCAATTTG 373
Query 310 GTGTCGTTTTCCGCATCAATGGGTATCATTCTCCTCGTCATCACTGGCTTCCGATTCAGG 369
|| ||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 374 GTATCGTTTTCCGCCTCAATGGGTATCATTTTCCTCGTCATCATTGGCTTCCGATTCAGG 433
Query 370 AACCGGTTAATAATGACGATCATGGTCATGTTTATGGTGGTGGCGGTTCTATGTATATCA 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AACCGGTTAATAATGACGATCATGGTCATGTTTATGGTGGTGGCGGTTCTATGTATATCG 493
Query 430 GCAGCCTTCTTCTTTGCTGCGGCGTTGGTTCAACACGATGATGACTTCATCCAGAATATA 489
|||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||| ||
Sbjct 494 GCAGCCTTCTTCTTTGCTGCGGGGTTGGTTCAACACGAGGATGATTTCATCGAGAAGATT 553
Query 490 CTTCAGATTTATGTGGGATTTTGGGTTGTGCTTCCTGTTTTAATACTCCTTATCCAACTA 549
||||| |||||| |||||||||||||| |||||||||||||| || |||| |||||| ||
Sbjct 554 CTTCAAATTTATTTGGGATTTTGGGTTTTGCTTCCTGTTTTAGTAATCCTGATCCAATTA 613
Query 550 GTGCGGTTTTTATGGTGGGCTATTAGGTTAATATGTTGTGGTTCG-GGACTTCGACGACG 608
||||||||||||||||||| ||||||||| ||||||||||||| | |||| ||||| |||
Sbjct 614 GTGCGGTTTTTATGGTGGGTTATTAGGTTCATATGTTGTGGTT-GTGGACGTCGACCACG 672
Query 609 GTCTACTCCACGGTTGCTGCCTTTGGCTCTGCCACCTGTCCCTTGA 654
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 673 GTCTACTCCACGGTTGCTGCCTTTGGCTCTGCCACCTGTCCGTTGA 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5