BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359010

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61530.1 | Symbols:  | small G protein family protein / RhoG...   424    6e-118


> AT5G61530.1 | Symbols:  | small G protein family protein / RhoGAP 
family protein | chr5:24742048-24744784 FORWARD LENGTH=1569
Length=1569

 Score =  424 bits (229),  Expect = 6e-118
 Identities = 271/291 (93%), Gaps = 3/291 (1%)
 Strand=Plus/Plus

Query  260  TGG-AAGAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTCCGATTGAGATCATTGTCCAG  318
            ||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct  619  TGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGATTGAGATCACTGTCCAG  678

Query  319  CGGCAAGAGTCAAGCAGGCCTATACCACTGATACT-GATTAAATGCGTAGATTATCTCAT  377
            ||||| ||||||||||||||||| || |||||||| | ||||||||| ||||||||||||
Sbjct  679  CGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACTAG-TTAAATGCGCAGATTATCTCAT  737

Query  378  ATTAACAGGGCTTAATTCACCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTGATTCA  437
            ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct  738  ATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTGATTCA  797

Query  438  ACAGTTGGTTTCTGCTTACAATCAAGATCCTAGTGTGTCAATACCTGAGGGTGTGAATCT  497
            ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| 
Sbjct  798  ACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATACCTGAGGGTGTGAATCC  857

Query  498  AGTTGATGTCGCTGCACTCATGAAATACTATCTTGCCACCCTTCCGACACC  548
            ||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct  858  AGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTTCCGACACC  908


 Score =  215 bits (116),  Expect = 4e-55
 Identities = 126/131 (96%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  138  GCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG  197
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  GCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG  494

Query  198  GACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCCGTTGGAAAGATCAA  257
            ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  495  GACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATCAA  554

Query  258  AATGGAAGAGG  268
            | |||||||||
Sbjct  555  AGTGGAAGAGG  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5