BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg359012 Length=1548 Score E Sequences producing significant alignments: (Bits) Value AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleoti... 2494 0.0 > AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleotide exchange factor 9 | chr4:7680153-7682622 FORWARD LENGTH=1762 Length=1762 Score = 2494 bits (1350), Expect = 0.0 Identities = 1488/1555 (96%), Gaps = 8/1555 (1%) Strand=Plus/Plus Query 1 ATGGTTCCATCGTTGGAACGAGGAATAAGCATTTCGAGTTCATTCAAT-TTAGATAGAAT 59 |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1 ATGGTTCCATCGTTGGAACGAGGAATAAGCATCACGAGTTCATTCAATCTT-GATAGAAT 59 Query 60 GTTCGATTCCTCACCGGGAAAAGAACAACAACAAGCTCATCTCGTGGAATCAACCATGCC 119 ||| |||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| Sbjct 60 GTTTGATTCCTCACCGGGAAAAGAACAACAACAACCTCATCTCGCGGAAACAACCATGCC 119 Query 120 GGAAAGTCAAAATCAAGAAAGCCTCGGTGGAAGTCCCGTGGAGACTAGCCGCCCGATGAC 179 ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGAGAGTCAAACTCAAGACAGCCTCGGTGGAAGTCCCGTGGAGACTAGCCGCCCGATGAC 179 Query 180 TTCCCGTCTGATTTCCCGTAGACAAGACAAGCAACAATCCGAAACGGAGATGATGAAAGA 239 ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 180 TTCTCGTCTGATTTCCCGTAGACAGGACAAGCAACAATCCGAGACGGAGATGATGAAAGA 239 Query 240 TAGATTCACAAAATTACTTCTGGGAGAAGATATGTCAGGTGGTGGTAAAGGTGTATCTTC 299 ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 240 TAGATTCACGAAATTACTTCTTGGAGAAGATATGTCTGGTGGTGGTAAAGGTGTATCTTC 299 Query 300 TGCTTTGGCACTATCAAATGCCATCACAAATCTAGCCGCGTCAATATTCGGGGAACAAAC 359 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 300 TGCTTTGGCACTATCAAATGCCATCACGAATCTAGCCGCGTCAATATTCGGGGAACAGAC 359 Query 360 AAAGTTGCAGCCGATGGCACCGGATAGGCGAGCGAGGTGGAAGAAAGAGATCGAATGGTT 419 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 360 AAAGTTGCAGCCGATGGCACCGGATAGACGAGCGAGGTGGAAGAAAGAGATCGATTGGTT 419 Query 420 GTTGTCTGTAACTGATCACATCGTCGAGTTTGTTCCATCTCAACAGATTAGTAAGGAAGG 479 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTGTCCGTGACTGATCACATCGTCGAGTTTGTTCCATCTCAACAGATTAGTAAGGAAGG 479 Query 480 AGTCTGCACCGAGATTATGGTTACAAGACAAAGAGGTGATCTCCTCATGAACATCCCGGC 539 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 480 AGTCTGCACCGAGATTATGGTGACAAGACAAAGAGGTGATCTCCTCATGAACATCCCTGC 539 Query 540 CCTCCGCAAACTCGATGCCATGCTCATTGATACATTGGACAATTTTAGAGGACACAATGA 599 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CCTTCGCAAACTCGACGCCATGCTCATTGATACATTGGACAATTTTAGAGGACACAATGA 599 Query 600 GTTTTGGTATGTATCGAGAGATTCAGAAGAAGGGAAACAAGCACGGAATGAGAGGACAAA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GTTTTGGTATGTATCGAGAGATTCAGAAGAAGGGAAACAAGCACGGAATGAGAGGACAAA 659 Query 660 GGACAAGTGGTGGCTTCCTCCAGTGAAAGTCCCTCTTAATGGCTTGTCCGAATCAGCCCG 719 ||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 660 GGACAAGTGGTGGCTTCCTCCGGTTAAAGTCCCTCCTAATGGCTTGTCCGAATCAGCCCG 719 Query 720 AAGAATGCTTCATTTTCAAAAAGATTCGGTCTCACAAGTCCAAAAAGCCGCCATGGCTAT 779 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 720 AAGAATGCTTCATTTTCAAAAAGATTCAGTCTCACAAGTCCAAAAAGCCGCCATGGCTAT 779 Query 780 TAATGCGCAAGTTCTATCAGAAATGGCTATCCCTGATAGCTATATTGAGTCTCTTCCAAA 839 ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 780 TAACGCGCAAGTTCTGTCAGAAATGGCTATCCCTGATAGCTATATCGAGTCTCTTCCAAA 839 Query 840 GAATGGAAGAGTAAGCCTTGGGGATTCGTTATACAAGAGCATAACAGAAGAGTGGTTTGA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GAATGGAAGAGTAAGCCTTGGGGATTCGTTATACAAGAGCATAACAGAAGAGTGGTTTGA 899 Query 900 TCCAGAGCAGTTCTTGTCCACACTTGACTTGTCTACAGAGCACAAAGTGTTGGATGTGAA 959 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 900 TCCAGAGCAGTTCTTGTCAACACTTGACTTATCTACAGAGCACAAAGTGTTGGATGTGAA 959 Query 960 GAACAGGATCGAGGCATCAATTGTTATATGGAAAAGGAAACTTCATCTAAAAGATAACAA 1019 ||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 960 GAATAGGATTGAGGCCTCAATCGTTATATGGAAAAGAAAACTTCATCTAAAAGACAACAA 1019 Query 1020 ATCTTCTTGGGGATCAGCTGTGAGTTTGGAGAAACGAGAGTTGTTCGAAGAGAGAGCCGA 1079 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1020 ATCTTCTTGGGGATCAGCTGTGAGCTTGGAGAAACGAGAGTTGTTCGAAGAGAGAGCCGA 1079 Query 1080 GACCATCTTGGTCTTGCTTAAACAAAAGTTCCCTGGTCTTCCTCAATCTTCACTTGACAT 1139 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1080 GACGATCTTGGTCTTGCTTAAACAAAAGTTCCCTGGTCTTCCCCAATCTTCCCTTGACAT 1139 Query 1140 TTCCAAAATTCAGTATAACAAGGATGTTGGACACGCGGTTTTGGAGAGCTACTCGAGGAT 1199 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 1140 TTCCAAAATTCAGTATAACAAGGATGTGGGACATGCGGTTTTGGAGAGCTACTCAAGGAT 1199 Query 1200 ATTAGAGAGCTTAGGGTACACGGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTC 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 ATTAGAGAGCTTAGGGTACACGGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTC 1259 Query 1260 TTTAGCCCGGAAGCAGTGCACTGGTGAAGAAACATCAGATGGTGGGAAATTAGCAACAGA 1319 ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| || Sbjct 1260 TTTAGCCCGGAAGCAATGCACAGGTGAAGAAACATCAGATGGTGGGAAAATAGCAACGGA 1319 Query 1320 AACGGACTC-G-G-C-GA-G-ATCTTCGAACTACTCAGGAGAGGAAACAGAGAAGCTTGA 1373 ||||||||| | | | | | |||||||||||||||||||||||||| |||||||||||| Sbjct 1320 AACGGACTCAGCGTCTGCTGGATCTTCGAACTACTCAGGAGAGGAAATAGAGAAGCTTGA 1379 Query 1374 ATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGCTGGAGTGACAATAGTTC 1433 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1380 ATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGTTGGAGTGACAATAGTTC 1439 Query 1434 AAAAGGGCAATCAGAGAAACCTCCAAAATCTCCAAAAATGACGCCAAAGAAATTCTCATA 1493 ||||||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||| Sbjct 1440 AAAAGGGCAGTCAGAGAAACCTCCAAAATCTCCGAGAATGACGCCAAAGAAACTCTCATA 1499 Query 1494 TTTGGAGAAGCTTGAAAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1548 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1500 TTTGGAGAAGCTTGAGAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1554 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76405229490 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5