BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359012
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleoti... 2494 0.0
> AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleotide
exchange factor 9 | chr4:7680153-7682622 FORWARD LENGTH=1762
Length=1762
Score = 2494 bits (1350), Expect = 0.0
Identities = 1488/1555 (96%), Gaps = 8/1555 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCCATCGTTGGAACGAGGAATAAGCATTTCGAGTTCATTCAAT-TTAGATAGAAT 59
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1 ATGGTTCCATCGTTGGAACGAGGAATAAGCATCACGAGTTCATTCAATCTT-GATAGAAT 59
Query 60 GTTCGATTCCTCACCGGGAAAAGAACAACAACAAGCTCATCTCGTGGAATCAACCATGCC 119
||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 60 GTTTGATTCCTCACCGGGAAAAGAACAACAACAACCTCATCTCGCGGAAACAACCATGCC 119
Query 120 GGAAAGTCAAAATCAAGAAAGCCTCGGTGGAAGTCCCGTGGAGACTAGCCGCCCGATGAC 179
||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGAGAGTCAAACTCAAGACAGCCTCGGTGGAAGTCCCGTGGAGACTAGCCGCCCGATGAC 179
Query 180 TTCCCGTCTGATTTCCCGTAGACAAGACAAGCAACAATCCGAAACGGAGATGATGAAAGA 239
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 180 TTCTCGTCTGATTTCCCGTAGACAGGACAAGCAACAATCCGAGACGGAGATGATGAAAGA 239
Query 240 TAGATTCACAAAATTACTTCTGGGAGAAGATATGTCAGGTGGTGGTAAAGGTGTATCTTC 299
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 240 TAGATTCACGAAATTACTTCTTGGAGAAGATATGTCTGGTGGTGGTAAAGGTGTATCTTC 299
Query 300 TGCTTTGGCACTATCAAATGCCATCACAAATCTAGCCGCGTCAATATTCGGGGAACAAAC 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 300 TGCTTTGGCACTATCAAATGCCATCACGAATCTAGCCGCGTCAATATTCGGGGAACAGAC 359
Query 360 AAAGTTGCAGCCGATGGCACCGGATAGGCGAGCGAGGTGGAAGAAAGAGATCGAATGGTT 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 360 AAAGTTGCAGCCGATGGCACCGGATAGACGAGCGAGGTGGAAGAAAGAGATCGATTGGTT 419
Query 420 GTTGTCTGTAACTGATCACATCGTCGAGTTTGTTCCATCTCAACAGATTAGTAAGGAAGG 479
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTGTCCGTGACTGATCACATCGTCGAGTTTGTTCCATCTCAACAGATTAGTAAGGAAGG 479
Query 480 AGTCTGCACCGAGATTATGGTTACAAGACAAAGAGGTGATCTCCTCATGAACATCCCGGC 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 480 AGTCTGCACCGAGATTATGGTGACAAGACAAAGAGGTGATCTCCTCATGAACATCCCTGC 539
Query 540 CCTCCGCAAACTCGATGCCATGCTCATTGATACATTGGACAATTTTAGAGGACACAATGA 599
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCTTCGCAAACTCGACGCCATGCTCATTGATACATTGGACAATTTTAGAGGACACAATGA 599
Query 600 GTTTTGGTATGTATCGAGAGATTCAGAAGAAGGGAAACAAGCACGGAATGAGAGGACAAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTTTGGTATGTATCGAGAGATTCAGAAGAAGGGAAACAAGCACGGAATGAGAGGACAAA 659
Query 660 GGACAAGTGGTGGCTTCCTCCAGTGAAAGTCCCTCTTAATGGCTTGTCCGAATCAGCCCG 719
||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 660 GGACAAGTGGTGGCTTCCTCCGGTTAAAGTCCCTCCTAATGGCTTGTCCGAATCAGCCCG 719
Query 720 AAGAATGCTTCATTTTCAAAAAGATTCGGTCTCACAAGTCCAAAAAGCCGCCATGGCTAT 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 AAGAATGCTTCATTTTCAAAAAGATTCAGTCTCACAAGTCCAAAAAGCCGCCATGGCTAT 779
Query 780 TAATGCGCAAGTTCTATCAGAAATGGCTATCCCTGATAGCTATATTGAGTCTCTTCCAAA 839
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TAACGCGCAAGTTCTGTCAGAAATGGCTATCCCTGATAGCTATATCGAGTCTCTTCCAAA 839
Query 840 GAATGGAAGAGTAAGCCTTGGGGATTCGTTATACAAGAGCATAACAGAAGAGTGGTTTGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAATGGAAGAGTAAGCCTTGGGGATTCGTTATACAAGAGCATAACAGAAGAGTGGTTTGA 899
Query 900 TCCAGAGCAGTTCTTGTCCACACTTGACTTGTCTACAGAGCACAAAGTGTTGGATGTGAA 959
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 TCCAGAGCAGTTCTTGTCAACACTTGACTTATCTACAGAGCACAAAGTGTTGGATGTGAA 959
Query 960 GAACAGGATCGAGGCATCAATTGTTATATGGAAAAGGAAACTTCATCTAAAAGATAACAA 1019
||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 960 GAATAGGATTGAGGCCTCAATCGTTATATGGAAAAGAAAACTTCATCTAAAAGACAACAA 1019
Query 1020 ATCTTCTTGGGGATCAGCTGTGAGTTTGGAGAAACGAGAGTTGTTCGAAGAGAGAGCCGA 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 ATCTTCTTGGGGATCAGCTGTGAGCTTGGAGAAACGAGAGTTGTTCGAAGAGAGAGCCGA 1079
Query 1080 GACCATCTTGGTCTTGCTTAAACAAAAGTTCCCTGGTCTTCCTCAATCTTCACTTGACAT 1139
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1080 GACGATCTTGGTCTTGCTTAAACAAAAGTTCCCTGGTCTTCCCCAATCTTCCCTTGACAT 1139
Query 1140 TTCCAAAATTCAGTATAACAAGGATGTTGGACACGCGGTTTTGGAGAGCTACTCGAGGAT 1199
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1140 TTCCAAAATTCAGTATAACAAGGATGTGGGACATGCGGTTTTGGAGAGCTACTCAAGGAT 1199
Query 1200 ATTAGAGAGCTTAGGGTACACGGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATTAGAGAGCTTAGGGTACACGGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTC 1259
Query 1260 TTTAGCCCGGAAGCAGTGCACTGGTGAAGAAACATCAGATGGTGGGAAATTAGCAACAGA 1319
||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 1260 TTTAGCCCGGAAGCAATGCACAGGTGAAGAAACATCAGATGGTGGGAAAATAGCAACGGA 1319
Query 1320 AACGGACTC-G-G-C-GA-G-ATCTTCGAACTACTCAGGAGAGGAAACAGAGAAGCTTGA 1373
||||||||| | | | | | |||||||||||||||||||||||||| ||||||||||||
Sbjct 1320 AACGGACTCAGCGTCTGCTGGATCTTCGAACTACTCAGGAGAGGAAATAGAGAAGCTTGA 1379
Query 1374 ATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGCTGGAGTGACAATAGTTC 1433
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 ATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGTTGGAGTGACAATAGTTC 1439
Query 1434 AAAAGGGCAATCAGAGAAACCTCCAAAATCTCCAAAAATGACGCCAAAGAAATTCTCATA 1493
||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 1440 AAAAGGGCAGTCAGAGAAACCTCCAAAATCTCCGAGAATGACGCCAAAGAAACTCTCATA 1499
Query 1494 TTTGGAGAAGCTTGAAAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1548
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTTGGAGAAGCTTGAGAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5