BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359014

Length=918
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17565.1 | Symbols:  | F-box family protein with a domain of...   174    1e-42


> AT4G17565.1 | Symbols:  | F-box family protein with a domain 
of unknown function (DUF295) | chr4:9782508-9783644 REVERSE 
LENGTH=1137
Length=1137

 Score =  174 bits (94),  Expect = 1e-42
 Identities = 137/158 (87%), Gaps = 1/158 (1%)
 Strand=Plus/Plus

Query  729   CATCTACCAGTTAGATTCTCTGACGTGGAGATGGGTAACAGTTGATTCTTTAGGTGATGA  788
             ||||| | ||||| || ||||||||  ||||||||||| ||| |||||||||||||||| 
Sbjct  855   CATCTTCGAGTTAAATCCTCTGACGCAGAGATGGGTAAAAGTCGATTCTTTAGGTGATGC  914

Query  789   TGCTTTAATCGTGGACATGGGTTTCACGGTTGTCGCTAAAGATATCCCAGGGATCAAGAA  848
              ||| ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct  915   GGCTATAATCTTGGACATGGGTATCACTGTTGTCGCTAAAGATATTCCAGGGATCAAGAA  974

Query  849   AAACTCCATTTATTTCACTGGCAACAGCCATCCCATTA  886
             ||||||||||||||||| ||||  || ||| ||| |||
Sbjct  975   AAACTCCATTTATTTCAGTGGCCTCAACCACCCC-TTA  1011



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44859093271


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5