BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359025

Length=1179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12915.1 | Symbols:  | Ribosomal protein S5/Elongation facto...   407    1e-112
  AT1G56070.1 | Symbols: LOS1 | Ribosomal protein S5/Elongation f...   361    1e-98 
  AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | c...   198    9e-50 


> AT3G12915.1 | Symbols:  | Ribosomal protein S5/Elongation factor 
G/III/V family protein | chr3:4112834-4115708 FORWARD LENGTH=2628
Length=2628

 Score =  407 bits (220),  Expect = 1e-112
 Identities = 288/322 (89%), Gaps = 0/322 (0%)
 Strand=Plus/Plus

Query  567   GGGCAGGTTCTTTGCCTTTGGTCGTGTCTTCTCTGGAAAGGTGGCTACTGGTATGAAAGT  626
             |||||||||||||||||| ||||||||||| ||||| | |||  ||||||||||||||||
Sbjct  1266  GGGCAGGTTCTTTGCCTTCGGTCGTGTCTTTTCTGGTACGGTTTCTACTGGTATGAAAGT  1325

Query  627   CAGGATCATGGGTCCCAACTTTGTCCCTGGTGAGAAGAAGGATTTATATGTCAAGAGTGT  686
             ||||||||||||||| |||| |||||||||||| ||||| ||| | |||||||| |||||
Sbjct  1326  CAGGATCATGGGTCCTAACTATGTCCCTGGTGAAAAGAAAGATCTGTATGTCAAAAGTGT  1385

Query  687   GCAGAGGACTGTCATTTGGATGGGTAAGAAACATGAGACAGTGGAAGATGTTCCGTGTGG  746
             ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct  1386  GCAGAGGACTGTCATTTGGATGGGTAAGAAACAAGAGACAGTGGAGGATGTTCCTTGTGG  1445

Query  747   TAATACAGTTGCTATGGTTGGGCTAGACCAGTTCATCACCAAGAATGCTACCTTGACGAA  806
             |||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct  1446  TAATACTGTTGCTATGGTTGGGCTGGATCAGTTCATCACCAAGAATGGTACCTTGACGAA  1505

Query  807   TGAAAAGGAAGTCAAAGCCCACCCGATCCGTGCCATGAGGTTTTCTGTCTCTCCTGTTGT  866
             ||| ||||||||  | || |||||| | |||||||||| ||||||||||||||| |||||
Sbjct  1506  TGAGAAGGAAGTGGACGCACACCCGCTTCGTGCCATGAAGTTTTCTGTCTCTCCCGTTGT  1565

Query  867   CCGAGTTGCTGTTCAGTGCAAG  888
              || ||||||||  | ||||||
Sbjct  1566  TCGTGTTGCTGTGAAATGCAAG  1587


> AT1G56070.1 | Symbols: LOS1 | Ribosomal protein S5/Elongation 
factor G/III/V family protein | chr1:20967930-20971742 REVERSE 
LENGTH=2958
Length=2958

 Score =  361 bits (195),  Expect = 1e-98
 Identities = 286/330 (87%), Gaps = 6/330 (2%)
 Strand=Plus/Plus

Query  567   GGGCAGGTTCTTTGCCTTTGGTCGTGTCTTCT-CTGGAAAGGTGGCTACTGGTATGAAAG  625
             ||| || ||||||||||| ||||||||||| | |||| |||||  ||||||||||||| |
Sbjct  1278  GGGTAGATTCTTTGCCTTCGGTCGTGTCTT-TGCTGGTAAGGTTTCTACTGGTATGAAGG  1336

Query  626   TCAGGATCATGGGTCCCAACTTTGTCCCTGGTGAGAAGAAGGAT-T-TATATGTCAAGAG  683
             |||| |||||||||||||||| | |||||||||||||||||||| | || |  | |||||
Sbjct  1337  TCAGAATCATGGGTCCCAACTATATCCCTGGTGAGAAGAAGGATCTGTACA-CT-AAGAG  1394

Query  684   TGTGCAGAGGACTGTCATTTGGATGGGTAAGAAACATGAGACAGTGGAAGATGTTCCGTG  743
             ||| ||||||||||||||||||||||||||||  || ||||||||||| ||||| || ||
Sbjct  1395  TGTTCAGAGGACTGTCATTTGGATGGGTAAGAGGCAAGAGACAGTGGAGGATGTCCCTTG  1454

Query  744   TGGTAATACAGTTGCTATGGTTGGGCTAGACCAGTTCATCACCAAGAATGCTACCTTGAC  803
             |||||| || ||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct  1455  TGGTAACACTGTTGCTATGGTTGGGCTGGATCAGTTCATCACCAAGAATGCTACATTGAC  1514

Query  804   GAATGAAAAGGAAGTCAAAGCCCACCCGATCCGTGCCATGAGGTTTTCTGTCTCTCCTGT  863
              ||||| ||||||||  | || ||||| || ||||| |||| ||||||||| ||||||||
Sbjct  1515  TAATGAGAAGGAAGTTGATGCTCACCCCATTCGTGCTATGAAGTTTTCTGTGTCTCCTGT  1574

Query  864   TGTCCGAGTTGCTGTTCAGTGCAAGGTTGC  893
             ||| || |||||||||||||| ||||||||
Sbjct  1575  TGTTCGTGTTGCTGTTCAGTGTAAGGTTGC  1604


> AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | 
chr4:10082108-10087203 FORWARD LENGTH=3395
Length=3395

 Score =  198 bits (107),  Expect = 9e-50
 Identities = 122/129 (95%), Gaps = 1/129 (1%)
 Strand=Plus/Plus

Query  1    ATGACGAGGAAGCTATCGAGCTTCTGTTTCTTGACCCATGGATTAGCGGGAATCTCTTGC  60
            ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct  114  ATGACGACGAAGCTATCGAGCTTCTGTTTCTTAACCCATGGATTAGCAGGAATCTCCTGC  173

Query  61   GAGAGAGAACATGGAAGTTCTCGTCGGTATTTTCTATCTCCCTTCTCGTCGATTAGCTTC  120
            |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct  174  GAGAGAGAACATGGAAGTTCTCGTCGAT-TTTTCTATCTCCCTTCTCGTCGATTAGTTTC  232

Query  121  TACTTCGTG  129
            |||||||||
Sbjct  233  TACTTCGTG  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57881228385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5