BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359028
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03420.1 | Symbols: | 5'-AMP-activated protein kinase-relat... 311 9e-84
> AT5G03420.1 | Symbols: | 5'-AMP-activated protein kinase-related
| chr5:845641-848914 FORWARD LENGTH=2006
Length=2006
Score = 311 bits (168), Expect = 9e-84
Identities = 211/231 (91%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 728 AGACCATGAAACGGGAAAATCAGGTTGAAATT-ACTCGGCTGAGGTTCATGCTGCG-TCA 785
|||||| ||||||||||||||||||||||||| | ||||||||||||||||||| | |||
Sbjct 1310 AGACCAGGAAACGGGAAAATCAGGTTGAAATTGA-TCGGCTGAGGTTCATGCTG-GATCA 1367
Query 786 AAAAGAGCAGGAGCTGTCAAGGTTGAAGGAGCAGATTGAAAAGGAAAAGCTGTCTCTTTC 845
|||||||| |||| |||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1368 AAAAGAGCTGGAGTTGTCAAGGCTGAAAGAGCAGATTGAAAAAGAAAAGCTGTCTCTTTC 1427
Query 846 GGTTCTTCAAAGACAAGCTGAAA-ATGAGATCCTAAAGGCCCAGATGCTTGTCTCAGTGA 904
||||| |||||||| ||||||| | ||||||| ||||||||| |||||| |||||| ||
Sbjct 1428 AGTTCTCCAAAGACAGGCTGAAACA-GAGATCCAAAAGGCCCAAATGCTTATCTCAGAGA 1486
Query 905 AGGAAGTTGAATTGCGAGAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGG 955
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1487 AGGAAGTTGAATTGCAAGAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGG 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5