BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359033
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47350.1 | Symbols: | F-box associated ubiquitination effec... 222 3e-57
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 206 3e-52
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 163 2e-39
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 84.2 2e-15
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 76.8 3e-13
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 58.4 1e-07
> AT1G47350.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:17358447-17360722 REVERSE LENGTH=1587
Length=1587
Score = 222 bits (120), Expect = 3e-57
Identities = 245/302 (81%), Gaps = 21/302 (7%)
Strand=Plus/Plus
Query 1 ATGCGGATCTATTCTCCTATTGACCGACAATTTGCATGTGGCTATGCCTCTGGTTTGGTC 60
|||| ||||||| ||| || ||||||| ||| ||||||||||||| |||||| || |
Sbjct 499 ATGCAGATCTATCCTCGTAACGACCGACGGTTTTCATGTGGCTATGCGTCTGGTATGATG 558
Query 61 TATTTCTTTGGTATGTGGATCAAAGGGAAGGAT-ATTTACCATGGAGTGCCTGTGATATG 119
||||||| ||||||| |||||||| | ||||| | |||| |||||||||||||| ||||
Sbjct 559 TATTTCTATGGTATGCGGATCAAA--G-AGGATGA-TTACGATGGAGTGCCTGTGCTATG 614
Query 120 TAACCCTA-ACACAGAAAAATATGTGACATTACCT--TATCTGTTAAGGTACAGA-AAGT 175
|||||||| | || | | | |||| ||| || ||| ||| || ||||| ||| |||
Sbjct 615 TAACCCTATA-ACGGGACATTATGCGACCTTGCCTGCTAT-TG-CAAGGTTTAGACAAG- 670
Query 176 CGTTTAGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGTTCATG---- 231
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 671 CGTTTAGCTTTTTCGGGTATGATCCGATTGACAAGCAATTCAAGGTATTGTTCATGATCA 730
Query 232 -G-CTTATCCAGGTTGTTCTGATCATCATAAAATTCTGACA-TTAGGAACTGGAAAAATG 288
| |||| ||| || || |||||||||||||| |||||| | || |||| |||| |||||
Sbjct 731 TGGCTTACCCATGTAGTCCTGATCATCATAAAGTTCTGAAACTT-GGAAGTGGAGAAATG 789
Query 289 AG 290
||
Sbjct 790 AG 791
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 206 bits (111), Expect = 3e-52
Identities = 256/323 (79%), Gaps = 22/323 (7%)
Strand=Plus/Plus
Query 304 GATGTTGACGCTATTGAGTTGCGAGTGTGGGTTCTTGAGGATGCTGAGAAAGAGGAATGG 363
|||| |||| || ||||||||| ||||||||||| ||||||| | ||||| || |||||
Sbjct 1037 GATGATGACATTAATGAGTTGCGTGTGTGGGTTCTAGAGGATGTTAAGAAACAGCAATGG 1096
Query 364 TCGAAATATACCTACACTTTAAGGGATGAAAAATTCTT-CGTTGATGGATATTCTTCCAT 422
||||||||| ||||||||| | ||||| | |||||| ||| | | | | | ||||||
Sbjct 1097 TCGAAATATGCCTACACTTGGACCGATGATAGATTCTTCCGTCG-TCG-T-GT-TTCCAT 1152
Query 423 CGTTGTCGTTGGAGTGACTACTAT-GGGTGACATTA-TTTTTTCGATG-GGATATTATGA 479
| | | ||||| |||| || | |||||| | || | ||||||||| | | ||| |
Sbjct 1153 C---G-C--TGGAGGGACTGCT-TCGGGTGA-AATAGTGTTTTCGATGCTCA-AATAT-A 1202
Query 480 -ATCGAAACAACCGTTTTATGTTTTCTACTTCAATCCCGGAAGGAATACGCTCCAACGTG 538
| | || ||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 1203 CACCTAAGCAACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTG 1262
Query 539 TTGAAATCCGAGGTTTTGAAGAA-TATTACGGTAAACAT--AGTGTTTACACCTTTGTAG 595
||||||||| |||||||| ||| | ||| | |||| | || |||| ||||||||||
Sbjct 1263 TTGAAATCCAAGGTTTTGGTGAAGTGTTAAAGAAAACTTGTAGAGTTTGCACCTTTGTAA 1322
Query 596 ACCACATAGAGGATCTTAATGTT 618
||||| |||||||||||||||||
Sbjct 1323 ACCACGTAGAGGATCTTAATGTT 1345
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 163 bits (88), Expect = 2e-39
Identities = 267/349 (77%), Gaps = 30/349 (9%)
Strand=Plus/Plus
Query 314 CTATTGAGTTGCGA-GTGTGGGTTCTTGAGGATGCTGAGAAAGAGGAATGGTCGAAATAT 372
||| |||||||| | ||||||||||| ||||||| ||||||| |||||||||| ||||||
Sbjct 854 CTAATGAGTTGC-ATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATAT 912
Query 373 ACCTACACTTTAAGGGATGAAAAATTCTT-CGTTGATGGATATTCTTCCATCGTTGTCGT 431
||||||||| | ||||| | |||||| ||| | | | | ||||| ||| |
Sbjct 913 GCCTACACTTGGACCGATGATACATTCTTCCGTCG-T-CA-CCT-TTCCA---TTG-C-- 962
Query 432 TGGAGTGACTACTAT-GGGTGACATTA-TTTTTTCGAT-GGGATATTATGA-ATCGAAAC 487
||||| ||| | | |||||| | || | |||||||| | | | || | ||| ||||
Sbjct 963 TGGAGCCACT-GTTTCGGGTGA-AATAGTGTTTTCGATACGCA-AGTA-CACATCTAAAC 1018
Query 488 AACCGTTTTATGTTTTCTACTTCAATCCCGGAAG-GAATACGCTCCAACGTGTTGAAATC 546
|||||||||||||||||||||||||||||| || ||| || ||||||||||| |||| |
Sbjct 1019 AACCGTTTTATGTTTTCTACTTCAATCCCG-AATCGAACACTCTCCAACGTGTAGAAACC 1077
Query 547 CGAGGTTTTGAAGAAT-ATT-ACGGTA-AA-CAT--AGTGTTTACACCTTTGTAGACCAC 600
| |||||||| ||| ||| | || | || | | || ||| |||||||||| |||||
Sbjct 1078 CAAGGTTTTGGTGAAGCATTTAAGGCAGAAACTTGTAGCGTTCGCACCTTTGTAAACCAC 1137
Query 601 ATAGAGGATCTTAATGTTAGCGATGCAAAATTACTCAAGTCAAGC-ATC 648
||||| ||||| |||||| |||| |||| |||||||||| || |||
Sbjct 1138 GTAGAGAATCTTGATGTTAACGATTTAAAACAACTCAAGTCAGGCCATC 1186
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 84.2 bits (45), Expect = 2e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 181 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTG 225
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTG 507
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 76.8 bits (41), Expect = 3e-13
Identities = 41/41 (100%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 184 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATT 224
|||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATT 515
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 58.4 bits (31), Expect = 1e-07
Identities = 76/96 (79%), Gaps = 9/96 (9%)
Strand=Plus/Plus
Query 433 GGAGTGACTACTATGGGTGACATTATTTTTTC-GATGGGATATTATGAATCGA-A-AC-A 488
||| ||| | |||| ||||| ||| ||||||| || | ||| ||| ||| | | | |
Sbjct 338 GGA-TGAATGCTATAGGTGAAATTGTTTTTTCGGA-GTCATA-TAT--ATCTACATCCAA 392
Query 489 ACCGTTTTATGTTTTCTACTTCAATCCCGGAAGGAA 524
||||||||||||||||||||||||||||| || |||
Sbjct 393 ACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5