BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359035
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13100.2 | Symbols: | RING/U-box superfamily protein | chr4... 994 0.0
> AT4G13100.2 | Symbols: | RING/U-box superfamily protein | chr4:7636438-7639037
REVERSE LENGTH=907
Length=907
Score = 994 bits (538), Expect = 0.0
Identities = 662/721 (92%), Gaps = 11/721 (2%)
Strand=Plus/Plus
Query 61 GTGGAGAATGGCCGGAGCTCAGTGACTCTAGAAGATATTCTGATGGCTGAAACGAGCGGT 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 88 GTGGAGAATGGCCGGAGCTCAGTGACTTTAGAAGATATTCTGATGGCTGAAACGAGCAGT 147
Query 121 TTCCGATCTCTTACTGCGCCGCCTTCTCCGGTGAGAAACCACTCGAATAGTAGTTTACTT 180
||||||||||||||| ||||| | |||||||||| || ||||| | |||||||||||||
Sbjct 148 TTCCGATCTCTTACTACGCCGACAACTCCGGTGAGGAATCACTCTAGTAGTAGTTTACTT 207
Query 181 GACGTTATGAGAAGAGAGCGTCGCCGTGATAAAACCGCTTGGAAATCTCTCCGGGATAAG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GACGTGATGAGAAGAGAGCGTCGCCGTGATAAAACCGCTTGGAAATCTCTCCGGGATAAG 267
Query 241 CTCCGCCTTAAACGCGCCGCTACTGGTTGGATCTCGTCTAATCCTATCCCTAATTTGGAT 300
||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 268 CTCCGTCTTAAACGCACCGCTACTGGTTGGATCTCGTCTAATCCTATCCCTACCTTGGAT 327
Query 301 AATCATATCCTTACTCCGGATAGCGACAGCCACCGGTTTAACCGCCTTGGATTCCTCCTC 360
|||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 328 AATCATATTCTTACTCCGGATAACGACAGCCACCGATTTAACCGCCTTGGATTCCTCCTC 387
Query 361 TCTAATTCGGAGACAAACCGGAGCAATGGTGATGTCAGCGATGGCGG-AGAGGAAGCGGC 419
|||| ||||||||||||||||||| | |||| |||||||| | | | ||||||||||||
Sbjct 388 ACTAACTCGGAGACAAACCGGAGCAGTCGTGACGTCAGCGACG-CAGCAGAGGAAGCGGC 446
Query 420 GGAGCGAGAAGGAAGGCTCCAGCTAGGCACGGTGTTGGCCGCGGATAGAGAGGAAATGCA 479
|||||||||||||||||||| ||||||||| |||||||| ||||| ||||| | ||
Sbjct 447 GGAGCGAGAAGGAAGGCTCCGGCTAGGCACCGTGTTGGCGGCGGA--GAGAG-A---GC- 499
Query 480 GCCGCCGAGGATGTCTTTAATGGAGTTGTTGGAGGATAATGATGGACAAATGTATGAGGT 539
| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 500 -CA-CCGAGGATGTCTCTAATGGAGTTGTTGGAGGATAATGATGGACATATGTATGAACT 557
Query 540 CAGCGCGAGAGAAGAGGTGGAAGCGGAGGAAAGAGATGGTTGCGGCCGCGGAGGAGAGGC 599
||||||| |||| |||||||||| ||||| ||||||||| |||| | | |||||||||||
Sbjct 558 CAGCGCGCGAGACGAGGTGGAAGTGGAGGGAAGAGATGGCTGCGACGGGGGAGGAGAGGC 617
Query 600 GGTGGCGGTGACCGGGGCAGCGGAGTTGGGTTGTTGTGTGTGTATGATAAGGAGTAAAGG 659
|||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 618 GGTGGCGGTGACGGGGGCAGCGGAGTTGGGTTGTTGCGTGTGTATGGTAAGGAGTAAAGG 677
Query 660 TGCGGCTTTTATACCTTGCGGACATACATTTTGCCGATTGTGTTCGAGAGAGCTTTGGGT 719
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 678 TGCGGCTTTTATACCTTGCGGACATACGTTTTGTAGATTGTGTTCGAGAGAGCTTTGGGT 737
Query 720 ACAGAGAGGAAACTGTCCACTATGTAACACTACCATTTTACAAGTTCTTGATATTTTCTA 779
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 738 ACAGAGAGGAAACTGTCCACTATGTAACACTGCCATTTTACAAGTTCTTGATATTTTCTA 797
Query 780 G 780
|
Sbjct 798 G 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5