BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359038
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13090.1 | Symbols: XTH2 | xyloglucan endotransglucosylase/h... 580 6e-165
> AT4G13090.1 | Symbols: XTH2 | xyloglucan endotransglucosylase/hydrolase
2 | chr4:7631535-7632870 REVERSE LENGTH=879
Length=879
Score = 580 bits (314), Expect = 6e-165
Identities = 647/801 (81%), Gaps = 50/801 (6%)
Strand=Plus/Plus
Query 111 TTTTGATGAGAACTATGTGGTTACATGGGGACAAGATCACGTCTTCAAATC-CTACCAAG 169
||| |||| ||||||||| |||||||||||||||||||| |||| ||| | | ||||||
Sbjct 93 TTTCGATGTGAACTATGTCGTTACATGGGGACAAGATCATATCTTGAAA-CTCAACCAAG 151
Query 170 GCAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCCAAAAACC 229
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 152 GAAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCC 211
Query 230 ACTACGGTTCAGGACTT-TTCCAAATGAGAATCAAAGTGTTTGGAA-ACAATTCTGCTGG 287
||||||| |||||| || |||||||||||||||||| || | || | | ||| || ||
Sbjct 212 ACTACGGATCAGGA-TTCTTCCAAATGAGAATCAAATTGCCTCCAAGAGA-TTCCGCCGG 269
Query 288 TGTTGTCACTGCCTTT-TACTTGACTTCTAAAGGAGACACCCAAGACGAGGTTGACTTTG 346
||||||||| || ||| |||||||||||||| ||||||||||| || |||||||||||||
Sbjct 270 TGTTGTCACAGC-TTTCTACTTGACTTCTAAGGGAGACACCCACGATGAGGTTGACTTTG 328
Query 347 AGTTCTTGGGGAACATAGAAGGCAAACCAATAACA-TTACAGACAAATGTGT--A-CACT 402
||||||||||||| | | |||| ||||| ||| || || || |||||||| | | || |
Sbjct 329 AGTTCTTGGGGAATAGACAAGGAAAACCGATAGCAATT-CAAACAAATGTATTTAGCAAT 387
Query 403 GAAGGCAAAGGAAATAGAGAACAAAGGTTT-TCTCTTTGGTTCGATCCAACTACT-GATT 460
| | ||| ||| ||||||||||| |||| | || |||||||||||| ||||| | ||
Sbjct 388 GGA--CAA-GGAGGTAGAGAACAAAAGTTTGT-TCCTTGGTTCGATCCCACTACAAG-TT 442
Query 461 TCCACACTTATGGCATTCTTTGGAATCCATATCATATCGTGTTTTACGTGGATAATA-TC 519
||||||||||||| |||||||||||||| ||||| || |||||||||||||| || | |
Sbjct 443 TCCACACTTATGGGATTCTTTGGAATCCGTATCAGATTGTGTTTTACGTGGACAA-AGTT 501
Query 520 CCAATAAGAGTGTTCAATAACAAT-ACAAGCACTGGCATGAGCTATCCATCAAAGCCTAT 578
||||||||||| ||||| || | | | || | ||| ||| ||||||||||||||| ||
Sbjct 502 CCAATAAGAGTATTCAAGAATA-TCAAAAAAAGTGGTGTGAACTATCCATCAAAGCCCAT 560
Query 579 GCAAGTGGTGAG-TAGTTTGTGGAACGGAGAAAATTGGGCAACA-GATGGTGGCAAA-AC 635
|||| | ||| | ||||||||||||||| || || ||||||||| | ||||| ||| |
Sbjct 561 GCAACTTGTG-GCTAGTTTGTGGAACGGTGAGAACTGGGCAACAAGC-GGTGGTAAAGAA 618
Query 636 CAAGATTAATTGGGCCTATGCTCCATTTAAGGC-CAATTTTCAAGGTTTCTCCGACTCC- 693
||||| |||||||||||||||||||||||||| |||| ||||| ||||||||| |
Sbjct 619 -AAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATAC-CAAGGCTTCTCCGAC-CAT 675
Query 694 GGTTGTCATGTCGATGATCTGAGTAACAATTCCAAAGCTTGTGGTTC-ATCAATGTATTG 752
|||||||| || ||| || ||| || ||| | || | ||||||||| | ||| ||| ||
Sbjct 676 GGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGTGGTTCGA-CAAGGTACTG 734
Query 753 GTGGAACACCATGA-AGTATAATT-GTCTTAG--CATCTACGAGCAGAAAGTC-TACAAG 807
||||||||| | || | |||| | || | || || | |||||||| || | | |
Sbjct 735 GTGGAACACAAGGACA-TATAGTCAGT-TAAGTGCAAAT--GAGCAGAAGGTAATGGA-G 789
Query 808 AATGTTAGAGAGAAA-TATATGAACTATGACTATTGTTCTGATCAAGC-TAGATTTCCTA 865
||||| |||| ||| || |||| |||||| ||||||||||||| || ||||| ||||
Sbjct 790 AATGTGAGAGC-AAAGTACATGACCTATGATTATTGTTCTGATCG-GCCTAGATATCCTG 847
Query 866 TTTTTCCTAATGAATGTCGAT 886
|| ||||| |||||||||||
Sbjct 848 TTCCTCCTAGTGAATGTCGAT 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5