BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg359038 Length=900 Score E Sequences producing significant alignments: (Bits) Value AT4G13090.1 | Symbols: XTH2 | xyloglucan endotransglucosylase/h... 580 6e-165 > AT4G13090.1 | Symbols: XTH2 | xyloglucan endotransglucosylase/hydrolase 2 | chr4:7631535-7632870 REVERSE LENGTH=879 Length=879 Score = 580 bits (314), Expect = 6e-165 Identities = 647/801 (81%), Gaps = 50/801 (6%) Strand=Plus/Plus Query 111 TTTTGATGAGAACTATGTGGTTACATGGGGACAAGATCACGTCTTCAAATC-CTACCAAG 169 ||| |||| ||||||||| |||||||||||||||||||| |||| ||| | | |||||| Sbjct 93 TTTCGATGTGAACTATGTCGTTACATGGGGACAAGATCATATCTTGAAA-CTCAACCAAG 151 Query 170 GCAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCCAAAAACC 229 | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 152 GAAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCC 211 Query 230 ACTACGGTTCAGGACTT-TTCCAAATGAGAATCAAAGTGTTTGGAA-ACAATTCTGCTGG 287 ||||||| |||||| || |||||||||||||||||| || | || | | ||| || || Sbjct 212 ACTACGGATCAGGA-TTCTTCCAAATGAGAATCAAATTGCCTCCAAGAGA-TTCCGCCGG 269 Query 288 TGTTGTCACTGCCTTT-TACTTGACTTCTAAAGGAGACACCCAAGACGAGGTTGACTTTG 346 ||||||||| || ||| |||||||||||||| ||||||||||| || ||||||||||||| Sbjct 270 TGTTGTCACAGC-TTTCTACTTGACTTCTAAGGGAGACACCCACGATGAGGTTGACTTTG 328 Query 347 AGTTCTTGGGGAACATAGAAGGCAAACCAATAACA-TTACAGACAAATGTGT--A-CACT 402 ||||||||||||| | | |||| ||||| ||| || || || |||||||| | | || | Sbjct 329 AGTTCTTGGGGAATAGACAAGGAAAACCGATAGCAATT-CAAACAAATGTATTTAGCAAT 387 Query 403 GAAGGCAAAGGAAATAGAGAACAAAGGTTT-TCTCTTTGGTTCGATCCAACTACT-GATT 460 | | ||| ||| ||||||||||| |||| | || |||||||||||| ||||| | || Sbjct 388 GGA--CAA-GGAGGTAGAGAACAAAAGTTTGT-TCCTTGGTTCGATCCCACTACAAG-TT 442 Query 461 TCCACACTTATGGCATTCTTTGGAATCCATATCATATCGTGTTTTACGTGGATAATA-TC 519 ||||||||||||| |||||||||||||| ||||| || |||||||||||||| || | | Sbjct 443 TCCACACTTATGGGATTCTTTGGAATCCGTATCAGATTGTGTTTTACGTGGACAA-AGTT 501 Query 520 CCAATAAGAGTGTTCAATAACAAT-ACAAGCACTGGCATGAGCTATCCATCAAAGCCTAT 578 ||||||||||| ||||| || | | | || | ||| ||| ||||||||||||||| || Sbjct 502 CCAATAAGAGTATTCAAGAATA-TCAAAAAAAGTGGTGTGAACTATCCATCAAAGCCCAT 560 Query 579 GCAAGTGGTGAG-TAGTTTGTGGAACGGAGAAAATTGGGCAACA-GATGGTGGCAAA-AC 635 |||| | ||| | ||||||||||||||| || || ||||||||| | ||||| ||| | Sbjct 561 GCAACTTGTG-GCTAGTTTGTGGAACGGTGAGAACTGGGCAACAAGC-GGTGGTAAAGAA 618 Query 636 CAAGATTAATTGGGCCTATGCTCCATTTAAGGC-CAATTTTCAAGGTTTCTCCGACTCC- 693 ||||| |||||||||||||||||||||||||| |||| ||||| ||||||||| | Sbjct 619 -AAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATAC-CAAGGCTTCTCCGAC-CAT 675 Query 694 GGTTGTCATGTCGATGATCTGAGTAACAATTCCAAAGCTTGTGGTTC-ATCAATGTATTG 752 |||||||| || ||| || ||| || ||| | || | ||||||||| | ||| ||| || Sbjct 676 GGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGTGGTTCGA-CAAGGTACTG 734 Query 753 GTGGAACACCATGA-AGTATAATT-GTCTTAG--CATCTACGAGCAGAAAGTC-TACAAG 807 ||||||||| | || | |||| | || | || || | |||||||| || | | | Sbjct 735 GTGGAACACAAGGACA-TATAGTCAGT-TAAGTGCAAAT--GAGCAGAAGGTAATGGA-G 789 Query 808 AATGTTAGAGAGAAA-TATATGAACTATGACTATTGTTCTGATCAAGC-TAGATTTCCTA 865 ||||| |||| ||| || |||| |||||| ||||||||||||| || ||||| |||| Sbjct 790 AATGTGAGAGC-AAAGTACATGACCTATGATTATTGTTCTGATCG-GCCTAGATATCCTG 847 Query 866 TTTTTCCTAATGAATGTCGAT 886 || ||||| ||||||||||| Sbjct 848 TTCCTCCTAGTGAATGTCGAT 868 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43954878625 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5