BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359039
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13090.1 | Symbols: XTH2 | xyloglucan endotransglucosylase/h... 1325 0.0
> AT4G13090.1 | Symbols: XTH2 | xyloglucan endotransglucosylase/hydrolase
2 | chr4:7631535-7632870 REVERSE LENGTH=879
Length=879
Score = 1325 bits (717), Expect = 0.0
Identities = 825/877 (94%), Gaps = 8/877 (1%)
Strand=Plus/Plus
Query 1 ATGAATATGATAAAATA-TCTATTTGAATTTGTTTCAGTATTGTTCTTGATGTTTACGGC 59
||||||| ||||| ||| | | |||||||| |||||||||||||||||||||||||| ||
Sbjct 1 ATGAATAGGATAAGATATTGT-TTTGAATTAGTTTCAGTATTGTTCTTGATGTTTACTGC 59
Query 60 TAATACTAGAGCTCGTGGTCGTGGAGGTACT-GATTTCGATGTGCACTATGTCGTTACAT 118
|||| | ||||||||||| ||||||| || | |||||||||||| |||||||||||||||
Sbjct 60 TAATGCAAGAGCTCGTGGACGTGGAGCTA-TAGATTTCGATGTGAACTATGTCGTTACAT 118
Query 119 GGGGACAAGATCACATCTTGAAACTCAACCAAGGGAAAGAAGTTCAGCTCTCCATGGATC 178
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 GGGGACAAGATCATATCTTGAAACTCAACCAAGGAAAAGAAGTTCAGCTCTCCATGGATT 178
Query 179 AGTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGA 238
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGA 238
Query 239 GAATCAAATTGCCTCCAAGAGATTCCGCGGGCGTTGTCACAGCTTTCTACTTGACTTCGA 298
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 239 GAATCAAATTGCCTCCAAGAGATTCCGCCGGTGTTGTCACAGCTTTCTACTTGACTTCTA 298
Query 299 AGGGAAACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCAA 358
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 AGGGAGACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCGA 358
Query 359 CAGCAATTCAAACAAATGTGTTTACCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTC 418
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 359 TAGCAATTCAAACAAATGTATTTAGCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTC 418
Query 419 TTTGGTTCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCATATCATA 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 419 CTTGGTTCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCGTATCAGA 478
Query 479 TTGTGTTTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATAACAAAAGAAGTGGCG 538
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 479 TTGTGTTTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATATCAAAAAAAGTGGTG 538
Query 539 TGAACTATCCATCAAAGCCCATGCAACTTGAGACTAGTTTGTGGAACGGTGAGG-CGTGG 597
|||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||
Sbjct 539 TGAACTATCCATCAAAGCCCATGCAACTTGTGGCTAGTTTGTGGAACGGTGAGAAC-TGG 597
Query 598 GCAACAAACGGTGGTAAGGACAAGATTAATTGGGCCTATGCTCCTTTTAAGGCCCAATTC 657
||||||| ||||||||| || ||||| ||||||||||||||||| |||||||| |||| |
Sbjct 598 GCAACAAGCGGTGGTAAAGAAAAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATAC 657
Query 658 CAAGGCTTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATATTGCGAACGTTTGT 717
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 658 CAAGGCTTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGT 717
Query 718 GGTTCGACAAAGTACTGGTGGAACACAAGGACGTATAGT-AGGTTAAGTGCAAATGAACA 776
|||||||||| ||||||||||||||||||||| |||||| || |||||||||||||| ||
Sbjct 718 GGTTCGACAAGGTACTGGTGGAACACAAGGACATATAGTCAG-TTAAGTGCAAATGAGCA 776
Query 777 GAAGGCAATGGAGAATGTGAGAGCAAAGTACATGAACTATGATTATTGTTCTGATCGGCC 836
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 777 GAAGGTAATGGAGAATGTGAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCGGCC 836
Query 837 TAGATATCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873
|||||||||||||||||||||||||||||||||||||
Sbjct 837 TAGATATCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5