BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359063
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13000.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent a... 1633 0.0
> AT4G13000.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent
and protein kinase C) kinase family protein | chr4:7598093-7599257
REVERSE LENGTH=1165
Length=1165
Score = 1633 bits (884), Expect = 0.0
Identities = 1027/1096 (94%), Gaps = 9/1096 (1%)
Strand=Plus/Plus
Query 4 AACCACCTCTCACCACCGGAGAACAAGATCCCGACTCTCAACTTCGACCATCTAGAGGTT 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 47 AACCACCTCTTACCACCGGAGAACAAGATCCCGACTCTCAACTTCGACCATCTAGAGATT 106
Query 64 TTCTCAGCCCTTGGTCGTGGATCTAAAGGAGTTGTGTTCCTCGTAAAAGCCGATAACGAA 123
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 107 TTCTCAGCCCTTGGACGTGGATCTAAAGGAGTTGTGTTCTTAGTAAAAGCCGATAACAAA 166
Query 124 TGGCTTGCTTTAAAAGTCATACTAAGAGAATCAATAGAGACAAAGAAGACAAAAGATGAG 183
||||||||||||||||||||||||||||||||||| ||| |||||||| | |||||||||
Sbjct 167 TGGCTTGCTTTAAAAGTCATACTAAGAGAATCAATCGAGTCAAAGAAGGCCAAAGATGAG 226
Query 184 TACAAACGCATAAGTTTCGAACAAGGAGTGTTGTCTCGTTTCGACCATCCTCTGTTTCCA 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 227 TACAAACGCATAAGTTTCGAACAAGGAGTGTTGTCTCGATTCGACCATCCTCTGTTTCCA 286
Query 244 CGTCTTCATGGTGTTTTATCTACTGATAAAGTTGTCGGTTACGCGATCGATTACTGTCCT 303
||||||||||||||| |||| || ||||||||| ||||||||||||| ||||||||||||
Sbjct 287 CGTCTTCATGGTGTTATATCCACCGATAAAGTTATCGGTTACGCGATTGATTACTGTCCT 346
Query 304 GGACGAGATCTCAATTCTTTAAGGAAGAAACAGTCGGAAGAAATGTTTTCCGATGAGATC 363
||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 347 GGAAGAGATCTCAACTCTTTAAGGAAAAAACAGTCGGAAGAAATGTTTTCCGATGAGATC 406
Query 364 ATAAGGTTTTATGCGGCGGAACTTGTGATCGCACTTGAGTATTTGCATAATCAAGGAATT 423
|| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 407 ATTAGATTTTACGCGGCGGAGCTTGTGATTGCACTTGAGTATTTGCATAATCAAGGAATT 466
Query 424 GTGTACAGAGATTTGAAGCCAGATAATGTGATGATTCAAGAGAATGGTCATTTGATGCTT 483
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 467 GTGTACAGAGATTTGAAGCCTGATAATGTGATGATTCAAGAGAATGGTCATCTGATGCTT 526
Query 484 GTTGATTTCGATCTTTCAACGAATCTACCTCCGAGAACTCCGCAATCTTC---TTCATCG 540
|||||||| |||||||| |||||||||||||| |||||||| |||||||| ||| |||
Sbjct 527 GTTGATTTTGATCTTTCGACGAATCTACCTCCTAGAACTCCACAATCTTCTTTTTCGTCG 586
Query 541 TCGCCGAGACTTTCGACGGCGACG-AGAAAAGAACGGTCTTTGTTCGCATTTTCCGGTTT 599
|| ||||||||||||||||||||| || |||||| ||||| | |||||||||||||||||
Sbjct 587 TCACCGAGACTTTCGACGGCGACGAAG-AAAGAAAGGTCTATCTTCGCATTTTCCGGTTT 645
Query 600 TTGTAACTCCGGAATCTCCCCGGACGACTCGGTTTCGAGAAT-CTCCGAGTCGTCCTCGT 658
|||||||||||||||||||||||||||||||||||||| || |||||||||| | |
Sbjct 646 ATGTAACTCCGGAATCTCCCCGGACGACTCGGTTTCGAG-ATCCTCCGAGTCGGAGTTTT 704
Query 659 CGGGAGAGAAGTCGAATTCGTTTGTTGGAACAGAGGAATATGTTGCGCCGGAGGTTATTA 718
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 705 CAGGAGAGAAGTCGAACTCGTTTGTTGGAACAGAGGAATATGTTGCGCCGGAGGTAATCA 764
Query 719 CCGGGAGTGGCCATGACTACGCCGTGGATTGGTGGTCGTTGGGAGTGGTTTTGTATGAGA 778
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CCGGAAGTGGCCATGACTTCGCCGTGGATTGGTGGTCGTTGGGAGTGGTTTTGTATGAGA 824
Query 779 TGTTGTACGGAGCGACGCCGTTTCGAGGATCGAACAGGAAAGAGACTTTTCTT-AAGATA 837
||||||||||||||||||||||| | || || ||| | |||||||||||| || ||||||
Sbjct 825 TGTTGTACGGAGCGACGCCGTTTAGGGGGTCCAACCGTAAAGAGACTTTT-TTAAAGATA 883
Query 838 TTAACTGAACCGCCGAGTTTGGTCGGAGAAACGACATCGTTAAGAGACTTGGTAAGAAAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TTAACTGAACCGCCGAGTTTGGTCGGAGAAACGACATCGTTAAGAGACTTGGTAAGAAAA 943
Query 898 CTGTTGGAGAAAGATCCTAGCCCTAGGATTAATGTGGAAGGAATCAAGGGACACGATTTC 957
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 944 CTGTTGGAGAAAGATCCTAGCCGTAGGATTAATGTTGAAGGAATCAAGGGACATGATTTC 1003
Query 958 TTTAGAGGGTTGGATTGGGATTTGGTGCTTAAGGTATCACGACCACCGTATATTCCGGCG 1017
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TTTAAAGGGTTGGATTGGGATTTGGTGCTTAAGGTATCACGACCACCGTATATTCCGGCG 1063
Query 1018 CCGGGAAATTATGAGATTTCGAAAATCGATGTGGAGAAATTCGTCCATGAAATATTTGCT 1077
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1064 CCGGAAAATTATGAGATTTCGAAAATCGACGTGGAGAAATTCGTCCATGAAATATTTACT 1123
Query 1078 AAATGTGAACATAATG 1093
||||||||||||||||
Sbjct 1124 AAATGTGAACATAATG 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5