BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359088
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12840.1 | Symbols: | Protein of unknown function (DUF707) ... 1581 0.0
> AT4G12840.1 | Symbols: | Protein of unknown function (DUF707)
| chr4:7533439-7535832 REVERSE LENGTH=1370
Length=1370
Score = 1581 bits (856), Expect = 0.0
Identities = 1084/1188 (91%), Gaps = 39/1188 (3%)
Strand=Plus/Plus
Query 31 GGATCATTAAGTATGAATCAAAAACGAAAGGGCTCGTCTCTTCGTCGCTTGTTCTCTTTA 90
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 31 GGATCATTAAGTATGAATCAAAAACGAAAGGGCTTGTCTCTTCGTCGCTTGTTCTCTTTA 90
Query 91 GTGTTTTTTCTTGCAATGATCTTCCTTATAGGGAATGCTTTTATTACAGTAGACTATAAA 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 GTGTTTTTTCTTGCAATGATCTTCCTTATAGGGAATGCTTTTATTACAGTAGACTATAAA 150
Query 151 GAGGGCATTGCGGGATGGAGTTCGATAATTAGACTGAATCTTGCAAAACTTAAGATGTGT 210
||||| || |||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 151 GAGGGTATCGCGGGATGGAGTTCGATAATTAGACTAAATCTTGCTAAACTAAAGATGTGC 210
Query 211 AAGACACAACTTAGGCCTCCTGGTAGTGAGACGTTACCGAGAGGTATTGCTGCAAGTACA 270
|||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||
Sbjct 211 AAGACACAACTTAGGCCTCCTGGTAGCGAGACGTTACCGCGAGGTATTGTTGCAAGTACA 270
Query 271 TCTGACTTGGAAATGCGACCATTATGGGGCGCAAAGCGCGATAAGAAACCGAAGCCGAA- 329
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||
Sbjct 271 TCTGACTTGGAAATGCGACCGTTATGGGGAGCAAAGCGCGATAAGAAACCGAAACC-AAG 329
Query 330 CTTATTGGCTATGGCAGCCGGAATAAAACAGAAGGAAAGTGTCAACAAGATTGTCAAGAA 389
|||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 330 CTTATTAGCTATGGCAGTTGGAATAAGACAAAAGGAAAGTGTCAACAAGATTGTCAAGAA 389
Query 390 GTTTCGGTCAAGTGAGTTCGTTGTGATGCTGTTTCATTATGATGGTTCCGTGGATGAATG 449
||||| ||||||||||| ||||||||||||||||| || |||||| | |||||||||||
Sbjct 390 GTTTCCATCAAGTGAGTTTGTTGTGATGCTGTTTCACTACGATGGTGCTGTGGATGAATG 449
Query 450 GAAGGAGTTTGAGTGGAGTGAAACTGCTATTCATATTTCTGTAGTAAACCAAACCAAATG 509
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 450 GAAGGAGTTTGAGTGGAGTGACACTGCCATTCATATTTCTGTAGTAAACCAAACCAAATG 509
Query 510 GTGGTTTGCAAAGCGTTTTCTACACCCGGATATTGTCTCAGCATATTCATACATATTTCT 569
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 510 GTGGTTTGCAAAGCGTTTTCTACACCCGGATATTGTCTCAGCTTATTCTTACATTTTTCT 569
Query 570 TTGGGATGAAGATCTCGGTGTTGACCATTTTGACGCTACAAGATATGTTTCAATAATTAA 629
|||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||
Sbjct 570 ATGGGATGAAGATCTCGGTGTTGACCATTTTGATGCTAGAAGGTATGTTTCAATTATTAA 629
Query 630 AGACGAAGGGCTTGAAATATCACAGCCTGCTCTTGATCCTAATTTCTCTGAAGTGCATCA 689
||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 630 AGAAGAAAAGCTTGAAATATCACAACCTGCTCTTGATCCCAATTTCTCTGAAGTGCATCA 689
Query 690 TCAACTTACCTCACGGGACAAGAAATCAAGAGTACATAGGAGAACACACAAAGTCATTGG 749
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 690 TCAACTTACCTCACGAGACAAGAAATCAAGAGTACATAGGAGAACATACAAAGTCATTGG 749
Query 750 TCGGGCTAGGTGCAACGAGAATAGCACTGGACCTCCTTGCACAGGATTTGTCGAAATGAT 809
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 750 TCGGGCGAGGTGCAACGAGAATAGCACTGGACCTCCTTGCACAGGATTTGTTGAAATGAT 809
Query 810 GGCTCCTGTGTTTTCCAGAGCAGCTTGGAGGTGTACATGGCATATGATTCAGAATGACTT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GGCTCCTGTGTTTTCCAGAGCAGCTTGGAGGTGTACATGGCATATGATTCAGAATGACTT 869
Query 870 AAACCACGGATGGGGTATAGATTTTCAGCTTGGATATTGTGCACAGGGTGATCGAACCAA 929
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AAACCATGGATGGGGTATAGATTTTCAGCTTGGATATTGTGCACAGGGTGATCGAACCAA 929
Query 930 AAATATCGGCATTGTTGATTCCGAGTATATACTTCATATGGGTCTTCCTACATTAGGAGG 989
||||||||| |||||||||||||||||||||||||||||||||||| | | || |
Sbjct 930 AAATATCGGTATTGTTGATTCCGAGTATATACTTCATATGGGTCTT-C--C--TA-CA-- 981
Query 990 TTCAGCTGAAAACAAGGAAGTAACTATAGTTACTGCGTATAAAC-AGACGGATTCA-GGA 1047
|| || | |||| || | || || | | |||| ||||||||||| |||
Sbjct 982 TT-AG--G------AGGAGGT---T-CAG---CT--G-A-AAACAAGACGGATTCAGGGA 1021
Query 1048 CAACTCAATAAGACCAAGACTAAGCATGATTCAG-C--ATC-CCAT-A-TATTATCTGGT 1101
| ||| |||||||||||||| ||||| | ||| | ||| ||| | | | | |||||
Sbjct 1022 -AGCTCGATAAGACCAAGACTCCGCATGCTGCAGACAAATCATCATCAGTGTCAACTGGT 1080
Query 1102 AGATCTGAGGTTCGGAAGCAGACTTACGCCGAATTAGAGACTTTTAAACATAGATGGAAA 1161
||| |||||||||||||||| ||||| | ||| |||||||||||||||||||||||||||
Sbjct 1081 AGAACTGAGGTTCGGAAGCAAACTTATGTCGAGTTAGAGACTTTTAAACATAGATGGAAA 1140
Query 1162 AATGCAGTGAAGAACGATGAGTGCTGGATAGACCGATTCCAAACATGA 1209
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AATGCTGTGAAGAACGATGAGTGCTGGATAGACCGATTCCAAACATGA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5