BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359089
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12830.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1901 0.0
> AT4G12830.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:7531141-7533587 FORWARD LENGTH=1490
Length=1490
Score = 1901 bits (1029), Expect = 0.0
Identities = 1132/1183 (96%), Gaps = 2/1183 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTTCATATTCACAACCCTAACTTTTTCAACACTCATCGTCTCCGATCATCTCTT 60
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 49 ATGGCGGTTCATATTCACAACCCTAACTTTTTCCACACTCATCATCTCCGAGCATCTCTT 108
Query 61 ACTTCTGCTTCTGCACCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAAATAT 120
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 109 ACTTCTGCCTCTGCATCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAAGTAT 168
Query 121 CAC-AGCTTCATCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGTTTC 179
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 C-CTAGCTTCCTCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGTTTC 227
Query 180 TGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCAGATCAACCGAGTCCATCAGA 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 228 TGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCGGATCAACCGAGTCCATCAGA 287
Query 240 TGAGTGGTTGAAGCAAGGGAAATGGGTTAAAGCTCATAGAGTTGGTGGCTCTGGTGTAGA 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 288 TGAGTGGTTGAAGCAAGGGAAATGGGTTAAAGCTCATAGAGTTGGCGGCTCTGGTGTAGA 347
Query 300 AGCAAAAGATCCGATTTTCGGGCTAACAATGGGAGCTAGCTCTCAAGCTTCAAAAGATCT 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 348 AGCAAAAGATCCGATTTTCGGATTAACAATGGGAGCTAGCTCTCAAGCTTCAAAAGATCT 407
Query 360 TTTTCGATGGTTTTGTGTAGAATCCGGGAGTGTAGATAGTCCTCCTGTTATACTCATCCA 419
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TTTCCGATGGTTTAGTGTAGAATCCGGGAGTGTAGATAGTCCTCCTGTTATACTCATCCA 467
Query 420 TGGATTCCCATCCCAGGCTTACTCTTACCGGAAAACTCTTCCCGTTCTTTCAAAGAATTA 479
|||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 468 TGGATTCCCATCTCAGGCTTATTCTTACCGGAAAACTATTCCCGTTCTTTCAAAGAACTA 527
Query 480 CCGCGCCATTGCTTTTGATTGGCTAGGATTTGGATTTTCTGACAAGCCTCAGGCTGGATA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CCGCGCCATTGCTTTCGATTGGCTAGGATTTGGATTTTCTGACAAGCCTCAGGCTGGATA 587
Query 540 TGGATTTAACTATACAATGGACGAGTTTGTATCGTCGCTTGAATCATTCATTGATGAAGT 599
|||||| ||||||||||||||||||||||| || ||||| || ||||||||||| |||||
Sbjct 588 TGGATTCAACTATACAATGGACGAGTTTGTTTCTTCGCTGGAGTCATTCATTGACGAAGT 647
Query 600 AACTACCAGTAAGGTGTCACTTGTGGTGCAGGGCTACTTCTCAACCGCTGTCGTAAAATA 659
|||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 648 AACTACTAGTAAGGTGTCACTTGTGGTGCAGGGCTACTTCTCAGCTGCTGTTGTAAAATA 707
Query 660 TGCAAGAAACCGACCTGACAAGATCAAGAATCTTATACTCTTGAATCCTCCTCTCACACC 719
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 708 TGCAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTCTCACACC 767
Query 720 CGAACATGCTAAACTTCCATCAACATTGTCTATATTCAGCAACTTTTTGCTTGGGGAGAT 779
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 768 AGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAACTTTTTGCTTGGGGAAAT 827
Query 780 TTTCTCTCAGGATCCTCTAAGAGCAAGTGACAAGCCTTTGACAAGCTGCGGTCCTTACAA 839
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 828 TTTCTCTCAGGATCCTCTAAGAGCAAGTGACAAGCCTTTAACAAGCTGTGGTCCTTACAA 887
Query 840 AATGAAAGAAGACGATGCAATGGTTTACCGAAGACCTTATCTCACCTCAGGTTCTTCTGG 899
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 888 AATGAAAGAAGACGATGCAATGGTTTATCGAAGACCTTATCTTACCTCAGGTTCTTCTGG 947
Query 900 TTTTGCCCTTAACGCCATCAGCAGGTCCATGAAGAAGGAACTTAAGAAATATGCAGAAGA 959
|||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 948 TTTTGCACTTAATGCCATAAGCAGGTCCATGAAGAAAGAACTTAAGAAATATGCAGAAGA 1007
Query 960 GATGAGGACATCACTAATGGATAAAAACTGGAAAATCCCGATCACCGTGTGCTGGGGACA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GATGAGGACATCACTAATGGATAAAAACTGGAAAATCCCGATCACCGTGTGCTGGGGACA 1067
Query 1020 ACGAGACAGGTGGCTGAGCTATGAGGGAGTTGAAGAGTTCTGCAAGAGTTCGGGACACAA 1079
|||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1068 ACGAGATAGGTGGTTAAGCTATGAAGGAGTTGAAGAGTTCTGCAAGAGTTCGGGACACAA 1127
Query 1080 CCTTGTCGAACTGCCAAATGCAGGCCATCATGTACAAGAAGATTGTGGAGAGGAACTTGG 1139
||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CCTCGTCGAATTACCAAATGCTGGCCATCATGTACAAGAAGATTGTGGAGAGGAACTTGG 1187
Query 1140 AGGAATAATCTCAAGAATCATAAGCAAATCTGCTCTATTCTAA 1182
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AGGAATAATCTCAAGAATCATAAGCAAATCTGCTCTATTCTAA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5