BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359097

Length=915
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant s...   119    5e-26


> AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant 
snare 11 | chr2:14830626-14833319 FORWARD LENGTH=1599
Length=1599

 Score =  119 bits (64),  Expect = 5e-26
 Identities = 76/82 (93%), Gaps = 0/82 (0%)
 Strand=Plus/Minus

Query  1    ATGTGGATGTTCAAAATCGATAACGAAGAGACAGAAATCAAAATCTTGGGCACGAGCTCT  60
            ||||||||||||||||||||||||||||||| ||| |||||||||  | |||||||||||
Sbjct  222  ATGTGGATGTTCAAAATCGATAACGAAGAGATAGATATCAAAATCACGAGCACGAGCTCT  163

Query  61   CTCTCCCCTACACACAGATTTT  82
            ||||||||||||| ||||||||
Sbjct  162  CTCTCCCCTACACCCAGATTTT  141



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44708390830


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5