BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359101
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27770.1 | Symbols: ACA1, PEA1 | autoinhibited Ca2+-ATPase 1... 896 0.0
> AT1G27770.1 | Symbols: ACA1, PEA1 | autoinhibited Ca2+-ATPase
1 | chr1:9671638-9676157 REVERSE LENGTH=3484
Length=3484
Score = 896 bits (485), Expect = 0.0
Identities = 565/604 (94%), Gaps = 4/604 (1%)
Strand=Plus/Plus
Query 1 ATGGGATCTGCAACAACTATTTGTAGTGACAAGACTGGAACTCTTACAACAGATCACATG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1486 ATGGGATCTGCAACAACTATTTGTAGTGACAAAACTGGAACTCTTACAACAAATCACATG 1545
Query 61 ACAGTTGTAAAAGCCTGCATCTGTGAACAAGCCAAAGAGGTTAATGGTTCTGATGCTGCT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1546 ACAGTTGTAAAAGCCTGCATCTGTGAACAAGCCAAAGAGGTTAATGGTCCTGATGCTGCT 1605
Query 121 AT-AATATTTGCCTCTAGTATCCCCGAGTCTGCTGTTAAACTCCTATTGCAATCTATATT 179
|| || |||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 1606 ATGAA-ATTTGCCTCTGGTATCCCTGAGTCTGCTGTTAAACTTCTACTGCAATCTATATT 1664
Query 180 TACTAACACTGGCGGTGAGATTGTTGTGGGCAAAGGAAACAAAACCGAGATACTGGGAAC 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TACTAACACTGGTGGTGAGATTGTTGTGGGCAAAGGAAACAAAACCGAGATACTGGGAAC 1724
Query 240 ACCCACAGAAACTGCTCTGCTAGAATTTGGGTCGTCACTCGGAGGGGACTTCCAGGAAGT 299
|| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||
Sbjct 1725 TCCTACAGAAACTGCTCTGTTAGAATTTGGGTTGTCACTCGGAGGGGACTTCCAAGAAGT 1784
Query 300 AAGACAAGCCTCAAATGTTGTGATAGTTGAGCCCTTCAACTCTACAAAGAAAAGAATGGG 359
||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1785 AAGGCAAGCCTCAAATGTTGTGAAAGTTGAGCCCTTTAACTCTACAAAGAAAAGAATGGG 1844
Query 360 AGTTGTCATTGAGGTGCCTGAAGGACATTTCTGGGCGCATTGTAAGGGTGCTTCTGAGAT 419
||||||||||||| |||||||| |||||||| |||| ||||||||||||||||| |||||
Sbjct 1845 AGTTGTCATTGAGCTGCCTGAAAGACATTTCCGGGCACATTGTAAGGGTGCTTCAGAGAT 1904
Query 420 AGTTTTAGATTCTTGTGATAAGTACATCAAGAAAGATGGTGAAGTTGTTTCC-CTTGATG 478
|||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||
Sbjct 1905 AGTTTTAGATTCTTGTGATAAGTACATCAACAAAGATGGTGAAGTTGTT-CCTCTCGATG 1963
Query 479 AAGAATCTACCAGTCACCTAAAGAACATAATCGAGGAATTTGCTAGTGAAGCACTTCGAA 538
|| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 1964 AAAAATCGACCAGTCACCTGAAGAACATAATTGAGGAATTTGCTAGCGAAGCACTTCGAA 2023
Query 539 CTCTTTGCCTTGCTTATTTCGAGATTGGTGATGAATTCTCATTAGAAGCGCGTATACCAA 598
|||||||||| || |||||||| ||||||||||||||||||||||| || | ||| ||||
Sbjct 2024 CTCTTTGCCTAGCGTATTTCGAAATTGGTGATGAATTCTCATTAGAGGCTCCTATTCCAA 2083
Query 599 GTGG 602
||||
Sbjct 2084 GTGG 2087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5