BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359123
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2628 0.0
AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1291 0.0
> AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G04280.1);
Has 136 Blast hits to 136 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses
- 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr4:7482466-7484405
REVERSE LENGTH=1940
Length=1940
Score = 2628 bits (1423), Expect = 0.0
Identities = 1588/1668 (95%), Gaps = 9/1668 (1%)
Strand=Plus/Plus
Query 13 TCCAGAACCGGAGGTTTCCGACCAGAGAATCTAGGGCAAAACGCAGTAAGCTTAATCGGA 72
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 99 TCCAGAACCGGAGGTTTCCGACCTGAGAATCTAGGGCAAAACGCAGTATCCTTAATCGGA 158
Query 73 AGCATAGGCTTCTCTATATTCGTAATCGGAGTCGTAGTTTTCACCATTACCGCTGCTACA 132
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 159 AGCATAGGCTTCTCTGTACTCGTAATCGGAGTCGTAGTTTTCACCATTATCGCTGCTACA 218
Query 133 TATGAACCAGAAGATCCACTTTTTCACCCATCTGACAAAATCACAACTTTCCTCTCATCC 192
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 219 TATGAACCAGAAGATCCACTATTTCACCCATCTGACAAAATCACAACTTTCCTCACATCC 278
Query 193 AATTCAAACGCTACTCTTAAATCCGACGACAGTGTTGTTAAAACCGGTGAAGATTTCATG 252
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 279 AATTCAAACGCTACTCTTAAATCCGACGACAGTATTGTCAAAACCGGTGAAGATTTCATG 338
Query 253 GCGGCGAACCAAACCGCG-TTCGCTGGATTCATCAACATAGCTGATGTGGAAACATCTGA 311
|||||||||||||||||| || || ||||||||||| ||||||||||| |||||||||||
Sbjct 339 GCGGCGAACCAAACCGCGTTTGGC-GGATTCATCAATATAGCTGATGTTGAAACATCTGA 397
Query 312 GAATGATTCTGATGCTAATCAATTGGATTGTGATTCCAATGTCCCAATCGATTGCAAAGA 371
|||||| ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 398 GAATGACTCTGATGGTAATCAATTGGATTGTGATACCAATATCCCAATTGATTGCAAAGA 457
Query 372 TCCTGAAGTTTTTCACTTGATGATGAAAGCTACTATGGAGAAGTTTAAAGACATTCACTT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 458 TCCTGAAGTTTTTCACTTGATGATGAAAGCTACTATGGAGAAGTTTAAAGACAGTCACTT 517
Query 432 TTATAAGTTTGGTAAACCTGTGACTGTGGAA-G--GTACTAGTTCTTGTGATATGGCTTG 488
||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||
Sbjct 518 TTATAAGTTTGGTAAACCTGTGATTGTGGAAGGTAGTAGTAGTTCTTGTGATATGGCTTG 577
Query 489 GCGTTATAGACCTAAGGATGGTAAAACGGCTACGTTTTATAAGGATTATAGGAGGTTTGT 548
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 578 GCGTTATAGACCTAAGGATGGTAAAGCGGCTGCGTTTTATAAGGATTATAGGAGGTTTGT 637
Query 549 GATTGCAAAGTCTGAGAATTGTAGTGTTAGTGTGATGGGTATTGGTGAGTATCATTCGGG 608
||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 638 GATTGAAAAGTCTGGGAATTGTAGTGTTAGTGTGATGGGGATTGGTGAGTATCATTCGGG 697
Query 609 TGTGAATGCGAGGAAGCGGAAGAGGCCCGGGTTTCGGAATTCGAGTGGTGGTAAGGTTGA 668
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 698 TGTGAATGCGAGGAAGCGGAAGAGGCCCGGGTTTCGAAATTCGAGTGGTGGTAAGGTTGA 757
Query 669 TGATTTCTCATTGCCTGTGGTTGGTGAAGCAGTGAATGATTCACTTCCTGTGGTTGAGTC 728
||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 758 TGATTTCGCATTGCCTGTAGTTGGTGAAGCAGTGAATGATTCACTTCCTGTTGTTGAGTC 817
Query 729 TGAGAATGCGTTTAAAGAAGGTCATTACTTGGTTTATTCGGGTGGAGGAGATAGGTGTAA 788
||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 818 TGAAAATGTGTTTAAAGAAGGTCATTACTTGGTTTATTCTGGTGGAGGAGATAGGTGTAA 877
Query 789 GAGTATGAACCATTTCTTGTGGAGTTTCTTGTGTGCTTTGGGGGAAGCTCAGTATTTGAA 848
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 878 GAGTATGAACCATTTCTTGTGGAGTTTCTTGTGTGCTTTAGGGGAAGCTCAGTATTTGAA 937
Query 849 TAGGACTTTAGTGATGGATTTGAGTCTTTGTTTGTCTTCTGTTTATACGTTGTCTGGTCA 908
||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 938 TAGAACATTAGTGATGGATTTGACTCTTTGTTTGTCTTCTGTTTATACATTGTCTGGTCA 997
Query 909 AAACGAGGAAGGAAAGGACTTTAGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGC 968
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 AAACGAGGAAGGGAAGGACTTTAGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGC 1057
Query 969 TTCTGTGATAGACCAGGTGCAGTTTTGGGCAGATTGGGGAAAATGGTATAAGAAGAATGG 1028
|||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1058 TTCTATGTTAGACCAGGTGCAGTTTTGGGCTGATTGGGGGAAATGGTATAAGAAGAATGG 1117
Query 1029 ATTAAAGCTTCATCTTGTGGAAGACTTTAGGGTCACACCGATGAAGCTTGTTGATGTTAA 1088
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1118 ATTAAAGCTTCATCTTGTGGAAGATTTTCGGGTCACACCGATGAAGCTTGTTGATGTGAA 1177
Query 1089 GGACACGTTGATAATGAGGAAGTTCGGGACAGTAGAACCAGATAACTATTGGTACAGAGT 1148
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1178 GGACACGTTGATAATGAGGAAGTTCGGGACAGTAGAACCAGATAACTATTGGTATAGAGT 1237
Query 1149 TTGTGAAGGGGAGACAGAATCTGTTGTGCAAAAGCCTTGGCATCTGTTGTGGAAATCTAG 1208
|| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||
Sbjct 1238 ATGCGAAGGGGAGACAGAATCTGTTGTGCAAAGGCCTTGGAATCTATTGTGGAAATCTAA 1297
Query 1209 ACGGCTGATGGAGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTAT 1268
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 ACGACTGATGGAGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTAT 1357
Query 1269 TCACATTGAGAGAGGAGATAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTGGAAAAGGA 1328
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1358 TCACATTGAGAGAGGAGACAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTTGAAAAGGA 1417
Query 1329 TACTTCACCAAGCTCCATTTTATCTACCCTGAAGGACAAAATCGAGCAAGGGAGGAATCT 1388
|||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1418 TACTTCACCAAGCTCCATTTTATCTACCCTCCAGGACAAAATCGAACAAGGAAGGAATCT 1477
Query 1389 TTATATTGCAACAAATGAACCAGATGTAA-CTTTCCTTAACCC-TATGAAAGACAAGTAC 1446
|||||||||||||||||||||||| || | ||||| ||||||| | ||||||||||||||
Sbjct 1478 TTATATTGCAACAAATGAACCAGA-GTTATCTTTCTTTAACCCCT-TGAAAGACAAGTAC 1535
Query 1447 AAAACCCATCTTCTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCA 1506
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 AAACCCCATTTTCTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCA 1595
Query 1507 GAGACCATGAAGCTTAATGGAGGAAACCCAGTCGATTTTGACGGTTACATGAGAGCGTCT 1566
||||| | |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1596 GAGACAACGAAGCTTAATGGAGGAAACCCAGTTGAGTTTGACGGTTACATGAGAGCGTCT 1655
Query 1567 GTTGATACGGAAGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACC 1626
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 GTTGATACAGAGGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACC 1715
Query 1627 AATGACTGTAGAGACGGAATCGGCACTTGCAACGTAGCAGCAAGCTGA 1674
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1716 AATGACTGTAGAGATGGAATCGGCACTTGCAACGTAGCAGCAAGCTGA 1763
> AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes
- 6 (source: NCBI BLink). | chr2:1480068-1482089 REVERSE LENGTH=2022
Length=2022
Score = 1291 bits (699), Expect = 0.0
Identities = 1388/1705 (81%), Gaps = 109/1705 (6%)
Strand=Plus/Plus
Query 22 GGAGGTTTCCGACCAGAGAATCTAGGGCAAAACGCAGTAAGCTTAATCGG-AAGCATAGG 80
||||| ||||| ||||||||||||| ||||||||| | | ||||||||| || ||||||
Sbjct 134 GGAGGATTCCGTGCAGAGAATCTAGGTCAAAACGCACTTACCTTAATCGGTAA-CATAGG 192
Query 81 CTTCTCTA-TATTCGTAATCGGAGT-CGTAGTTTTCACCATTACCGCTGCTACATATGAA 138
|||||| | | ||||| ||||||| | || | |||||||| | ||| || || || |||
Sbjct 193 CTTCTC-ACTCTTCGTCTTCGGAGTAC-TAATCTTCACCATAATCGCCGCAACTTACGAA 250
Query 139 CCAGAAGATCCACTTTTTCACCCATCTGACAAAATCACAACTTTCCTCTCATCCA-ATTC 197
||||||||||| || || |||||||||||||||||||||||||||||| | |||| | ||
Sbjct 251 CCAGAAGATCCTCTCTTCCACCCATCTGACAAAATCACAACTTTCCTCACTTCCACA-TC 309
Query 198 AAACGCTACTCTTAAATCCGACGACAGTGTTGTTAAAACCGGTGAAGATTTCATGGC-GG 256
||||||||| |||| |||||| ||| |||||||||||||||||||||||||| || |
Sbjct 310 AAACGCTACACTTAGATCCGATGACTCCGTTGTTAAAACCGGTGAAGATTTCAT-GCTCG 368
Query 257 CGAACCAAACCGCGTTCGCTGGA-TTCATCAACAT-AGCTGATGTGGAA---A-CATC-- 308
| ||||||||||| || || || || |||||||| | | ||||| ||| | || |
Sbjct 369 CTAACCAAACCGCATTTGC-AGAGTTTATCAACATAAAC-GATGTTGAAGCCAGCACCAA 426
Query 309 TGAGA--A-T---GATTCTGATGCTAATCAA-TTGGATTGTGAT-TCCAATGTC-CCAAT 359
||||| | | || || | ||| ||| ||||| |||||| | ||| | |||||
Sbjct 427 TGAGACTACTACAGAGGAAGAGGGTAA-CAAGTTGGAATGTGATGT-GAAT-ACTCCAAT 483
Query 360 CGATTGCAAAGATCCTG-AAGTTTTTCA-CTTGATGATGAAAGCTACTATGGAGAAGTTT 417
|||||||||||| | | |||| ||||| ||| ||||||| ||||||||| || ||||||
Sbjct 484 TGATTGCAAAGAT-CAGCAAGTGTTTCATCTT-ATGATGAGAGCTACTATTGACAAGTTT 541
Query 418 AAAGACATTCACTTTTATAAGTTTGGTAAACCTGTGACT-GTG--GAAGGTACT-AGTTC 473
||||| ||||||||||||||||||||||| ||||| ||| | | |||||| | | |||
Sbjct 542 AAAGATATTCACTTTTATAAGTTTGGTAAGCCTGTTACTGGCGAAGAAGGT-GTGAATTC 600
Query 474 TTGTGATATGGCTTGGCGTTATAGACCTAAG-GATGGTAAAACG-GCTACGTTTTATAAG 531
|||||||||||| ||||||||||| ||| || ||||| || | | ||| | |||||||||
Sbjct 601 TTGTGATATGGCGTGGCGTTATAGGCCT-AGAGATGGGAAGA-GTGCTGCTTTTTATAAG 658
Query 532 GATTATAGGAGGTTTG-TGATTGCAAAGTCTGAGAATTGTAGTGTTAGTG-TGATGGGTA 589
|||||||||||||||| || |||| |||||||||||||||||||| |||| || |||| |
Sbjct 659 GATTATAGGAGGTTTGTTG-TTGCTAAGTCTGAGAATTGTAGTGTGAGTGTTGTTGGG-A 716
Query 590 TTGGTGAGTATCATTCGGGTGTGAATGCGAGGAAGCGGAAG-AG-----G---CCCGGGT 640
|||||||||||||||||||| |||||||||||||| ||||| || | | ||||
Sbjct 717 TTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGAGGAAGAAGAATCAGAAAGCTGGGT 776
Query 641 TTCG-GAATTCGAGTGGTGGTAAGGTTGATGATTTCTCATTGCCTGTGGTTGGTGAAGC- 698
|| | ||| | |||||| ||| ||||||||||| |||||||| ||||||||| |
Sbjct 777 TT-GAGAA---AACTGGTGGGAAGAAAGATGATTTCTCTTTGCCTGTTGTTGGTGAA-CT 831
Query 699 AGTGAATGATTCACTTCCTGTGGTTGAGTCTGAGAATGCGTTTAAAGA-AGGTC-ATTAC 756
||||||||||| |||||| ||||||||||||| | || |||| |||| || | | ||
Sbjct 832 TGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTT-AAGACTGG-CAAGTAT 889
Query 757 TTGGTTTAT-TCGGGTGGAGGAGATAGGTGTAAGAGTATGAACCA-TTTCTTGTGGAGTT 814
||||||||| | ||||| ||||||||||||||||||||||| || |||| |||||||||
Sbjct 890 TTGGTTTATGT-TGGTGGTGGAGATAGGTGTAAGAGTATGAATCATTTTC-TGTGGAGTT 947
Query 815 TCTTGTGTGCT-TTGGGGGAAGCTCAGTATTTGAATAGGACTTTAGTGATGGATTTGAGT 873
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 948 TCTTGTGTGCTCTT-GGGGAAGCTCAGTATTTGAATAGGACTCTAGTGATGGATTTGA-C 1005
Query 874 CTT-TGTTTGTCTTCTGTTTATACGTT-GTCTGGTCAAAACGAGGAAGGAAAGGACTTT- 930
||| |||||||||||| | ||||| || ||||||||| || |||||||| ||||| |||
Sbjct 1006 CTTGTGTTTGTCTTCTATCTATAC-TTCGTCTGGTCAGAATGAGGAAGGCAAGGA-TTTC 1063
Query 931 AGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGCTTCTGTGATAGA-CCAGGTGCA 989
|||||||||||||||||||||||||||||||| |||||||||||| | || || | ||
Sbjct 1064 AGGTTTTACTTTGATTTCGAGCATTTGAAAGAAGCTGCTTCTGTGTTGGATGAAGCT-CA 1122
Query 990 GTTTTGGG--CAGATTGGGGAAAATG-GT-A-TA-AGAAG-AATGGATTAAAGCTTCATC 1042
|||||||| ||| | ||||||| || || | | ||||| ||| |||| || |||||||
Sbjct 1123 GTTTTGGGCTCAG-TGGGGGAAATTGCGTAAGAAGAGAAGAAATAGATTGAACCTTCATC 1181
Query 1043 TTGTGGAAGACTTTAGGGTCACACCGATGAAGCTTGTTGATGTTAAGGACACGTTGATAA 1102
| ||||| || ||||||||||| || |||||||| | | ||| || || ||||||||||
Sbjct 1182 TCGTGGAGGATTTTAGGGTCACTCCCATGAAGCTCGCGGCTGTCAAAGATACGTTGATAA 1241
Query 1103 TGAGGAAGTTCGGGA-CAGTAGAACCAGATAACTATTGGTACAGAGTTTGTGAAGGGGA- 1160
|||||||||| ||| | ||||||||||| || ||||||||||| ||||||||||| ||
Sbjct 1242 TGAGGAAGTT-TGGATCTGTAGAACCAGACAATTATTGGTACAGGGTTTGTGAAGGAGAT 1300
Query 1161 GACAGAATCTGTTGTGCAAAAG-CCTTGGCATCTGTTGTGGAAATCTAGACGGCTGATGG 1219
| ||||||||||||| ||| | || ||||||||||| |||||||| ||| || ||||||
Sbjct 1301 G-CAGAATCTGTTGT-TAAACGACCGTGGCATCTGTTATGGAAATCAAGAAGGTTGATGG 1358
Query 1220 AGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTATTCACATTGAGA 1279
| || || ||||| ||||| || |||||||||||||| || |||||| | ||||||||||
Sbjct 1359 AAATCGTCTCTGCTATTGCATCAAGGTTAAACTGGGACTACGATGCTGTACACATTGAGA 1418
Query 1280 GAGGAGATAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTGGAAAAGGATACTTCACCAA 1339
||||||| || || ||||||||||| |||||||||||||| ||| ||||||||| || |
Sbjct 1419 GAGGAGAGAAAGCAAGAAACAAGGAGGTTTGGCCTAATCTTGAAGCGGATACTTCCCCGA 1478
Query 1340 GCTC-CATTTTATCTACCCTGAAGGACAAAATCG-AGCAAGGGAGGAATCTTTATATTGC 1397
|| | | | || || ||| || |||||||| | | || |||| ||| |||| || || ||
Sbjct 1479 GCGCTC-TCTTGTCGACCTTGCAGGACAAAGTTGAAG-AAGGAAGGCATCTCTACATCGC 1536
Query 1398 AACAAATGAACCAG-ATGTAACTTTCCTT-AACCCTATGAAAGACAAGTACAAAACCCAT 1455
|||||||||| || || || | || ||| |||||| ||||||| |||||| || |||
Sbjct 1537 AACAAATGAAGGAGAAT-TATCCTT-CTTCAACCCTTTGAAAGATAAGTACGCCACTCAT 1594
Query 1456 CTT-CTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCAGAGACCA- 1513
|| || | || | || ||||| ||||| |||||||| || |||||||||||||| |
Sbjct 1595 -TTCCTTTACGACTACAAAGATCTTTGGGATGAGAGCAGTGAGTGGTATTCAGAGACTAC 1653
Query 1514 TGAAGCTTAATGGAGGAAACCCAGTCGATTTTGACGGTTACATGAGAGCGTCTGTTGATA 1573
| |||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| |
Sbjct 1654 T-AAGCTTAATGGAGGCAACCCGGTCGAATTTGATGGTTACATGAGAGCATCTGTTGACA 1712
Query 1574 CGGAAGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACCAATGACT 1633
| ||||| ||||||||||||||||||||||||||||||||||| |||||||| || || |
Sbjct 1713 CAGAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATT 1772
Query 1634 GTAGAGACGGAATCGGCACTTGCAA 1658
||| ||| ||| | || || |||||
Sbjct 1773 GTAAAGATGGAGTTGGGACCTGCAA 1797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5