BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359205
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56970.1 | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr... 750 0.0
> AT5G56970.1 | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048268
REVERSE LENGTH=1595
Length=1595
Score = 750 bits (406), Expect = 0.0
Identities = 440/457 (96%), Gaps = 0/457 (0%)
Strand=Plus/Plus
Query 37 GGAAAAGGAGAGATTGCAACTTGTTCCAAAGACATAAACTCGGATCTTTTCTTCGCCGTG 96
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 633 GGAAAAGGAGAGATTGCAACTTGTTCCAAGGACATGAACTCGGATCTTTTCTTCGCGGTG 692
Query 97 TTAGGAGGTTTGGGTCAATTCGGAATTCTAACAAGAGCCAGAATTAAACTCGAAGTAGCT 156
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 693 TTAGGAGGTTTGGGTCAATTCGGCATTATAACAAGAGCCAGAATTAAACTTGAAGTAGCT 752
Query 157 CCAAAAAGGGCCAAGTGGTTAAGGTTTCTATACATAGATTTCTCCGAATTCACAAGAGAT 216
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CCGAAAAGGGCCAAGTGGTTAAGGTTTCTATACATAGATTTCTCCGAATTCACAAGAGAT 812
Query 217 CAAGAACGATTGATATCGAAAACGGACGGTGTAGATTTCTTGGAAGGTTCCGTAATGGTG 276
||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 813 CAAGAACGAGTGATATCGAAAACGGACGGTGTAGATTTCTTAGAAGGTTCCATTATGGTG 872
Query 277 GACCATGGTCCACCGGATAACTGGAGATCCACGTATTATCCACCGTCCGATCACTTGAGG 336
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GACCATGGCCCACCGGATAACTGGAGATCCACGTATTATCCACCGTCCGATCACTTGAGG 932
Query 337 ATTGCCTCAATGGTCAAACGACATCGTGTCATCTACTGCCTTGAAGTCGTCAAGTATTAC 396
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 ATCGCCTCAATGGTCAAACGACATCGTGTCATCTACTGCCTTGAAGTCGTCAAGTATTAC 992
Query 397 GACGAAACTTCTCAATACACAGTCAACGAGGAAATGGAGGAGTTAAGCGAGAGTTTGAAC 456
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 993 GACGAAACTTCTCAATACACAGTCAACGAGGAAATGGAGGAGTTAAGCGATAGTTTAAAC 1052
Query 457 TATGTCAGAGGGTTTATGTACGAGAAAGATGTGACGT 493
|||| |||||||||||||||||||||||||||||||
Sbjct 1053 CATGTAAGAGGGTTTATGTACGAGAAAGATGTGACGT 1089
Score = 468 bits (253), Expect = 4e-131
Identities = 275/286 (96%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 492 GTGGAATGATCGAATGTCTGCCGCTATACCTGAGGAAGATGTATTTTATGCGGTAGGGTT 551
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1292 GTGGAATGATCGGATGTCTGCCGCTATACCCGAGGAAGATGTATTTTATGCGGTAGGGTT 1351
Query 552 TCTAAGATCTGCGGGTTTTGACAATTGGGAGGCTTATGATCAAGAAAATATGGAAATATT 611
| ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 1352 TTTAAGATCCGCGGGTTTTGACAATTGGGAGGCTTTTGATCAAGAAAACATGGAAATACT 1411
Query 612 AAAGTTTTGTGAGGATGGTAATATGGGGGTTATACAATATCTTCCTTATCATTCATCACA 671
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GAAGTTTTGTGAGGATGCTAATATGGGGGTTATACAATATCTTCCTTATCATTCATCACA 1471
Query 672 AGAAGGATGGGTTAGACATTTTGGTCCGAGGTGGGATATTTTCGTAAAGAGAAAATATAA 731
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1472 AGAAGGATGGGTTAGACATTTTGGTCCGAGGTGGAATATTTTCGTAGAGAGAAAATATAA 1531
Query 732 ATATGATCCCAAAATGATATTATCACCGGGACAAAATATATTTCAA 777
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 ATATGATCCCAAAATGATATTATCACCGGGACAAAATATATTTCAA 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5