BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359214
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50340.1 | Symbols: | ATP-dependent peptidases;nucleotide b... 931 0.0
> AT5G50340.1 | Symbols: | ATP-dependent peptidases;nucleotide
binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged
DNA binding;nucleoside-triphosphatases | chr5:20491417-20495931
REVERSE LENGTH=2083
Length=2083
Score = 931 bits (504), Expect = 0.0
Identities = 557/583 (96%), Gaps = 2/583 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAACTCAGGACTTGAAGTAGTCTCAAACCCTAGTGGCATATATCTTAGTCAACAG 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1284 ATGGCAAACTCAGGACTTGAAGTGGTCTCAAACCCAAGTGGCATATATCTTAGTCAACAG 1343
Query 61 AACCCAGATTCAGATGTTTTAGCTGGATTAGCTG-ACGCAGTTGTTATGGATGGATCTCG 119
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1344 AACCCAGATTCAGATGTTTTAGCTGGATTAGCTGTA-GCAGTTGTTATGGATGGATCTCG 1402
Query 120 GAGTTTCCTAATTGAAGTTCAGGCGTTGTGTTCGCCTGGCCCAACAGTTTCAAGGCATGT 179
|||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 1403 GAGTTTCCTAATTGAAGTTCAGGCATTGTGTTCCCCTGGCTCAACAGTTTCAAGGCATGT 1462
Query 180 CAATGGTGTTCAAGCAAGCAGAGCTGATATGATAATTGCAGTTCTTATGAAGCAAGCTGG 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1463 CAATGGTGTTCAAGCAAGCAGAGCTGACATGATAATTGCAGTTCTTATGAAGCAAGCTGG 1522
Query 240 TCTTAGAATACAGGAAAATGGGATTTTTCTGAACGTCGCTAACGGAATGGCTCTTTCTGA 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 TCTTAGAATTCAGGAAAATGGGATTTTTCTGAACGTCGCTAACGGAATGGCTCTTTCTGA 1582
Query 300 GACTGCTGGCGACCTTGCAATAGCAGCAGCAATTTGTAGCAGTTTCTTGGAGTTTCCAAT 359
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1583 GACTGCTGGTGACCTTGCAATAGCAGCAGCTATTTGTAGCAGTTTCTTGGAGTTTCCAAT 1642
Query 360 TCCTCACGGTGTAGCATTCATTGGTGAGATTGGTCTTGGGGGCGAGGTTCGCACGGTACC 419
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1643 TCCTCACGGTGTAGCATTCATTGGCGAGATTGGTCTTGGGGGAGAGGTTCGCACGGTACC 1702
Query 420 AAGAATGGAGAAAAGGGTAAGTACATTGGCAAAGCTAGGGTTTAACAAATGTGTGGTTCC 479
|||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||
Sbjct 1703 AAGAATGGAGAAAAGGGTGAGTACAGTGGCAAAGCTTGGGTTTAACAAATGTGTAGTTCC 1762
Query 480 CAAATCAGTGGAGGAGTCGCTAAAGGCGCTAAATTTGAAAGAGATTGAGATAATCGGATG 539
|||||||||||||| || || |||||| | | |||||||||||||||||||||||||||
Sbjct 1763 TAAATCAGTGGAGGAATCACTTAAGGCGTTGAGTTTGAAAGAGATTGAGATAATCGGATG 1822
Query 540 CAAGAATCTGAAAGAGTTAATTAATGCTGTGTTTAGGGGATAA 582
||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1823 CAAGAATCTGAAAGAGTTAATCAATGCTGTGTTTAAGGGATAA 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5