BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359220
Length=2235
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78280.1 | Symbols: | transferases, transferring glycosyl g... 1535 0.0
> AT1G78280.1 | Symbols: | transferases, transferring glycosyl
groups | chr1:29452555-29457373 FORWARD LENGTH=3355
Length=3355
Score = 1535 bits (831), Expect = 0.0
Identities = 950/1008 (94%), Gaps = 5/1008 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAAGTCCCTTTTAGAATATCTCAGAGGAGTCCCAGACTCAATTTCCATGAAGTTC 60
||||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||
Sbjct 783 ATGGTGAAGTCCCGTTTAGAATATCTCAGAGGAGCCCCA-ACAAAATTTCCATGAAGTTC 841
Query 61 AAGGATTACATCTCGTATATGAAAACCCAGCGGGATGAAGATCCTCTATACGTTTTCGAT 120
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 842 AAGGATTACATCGCATATATGAAAACTCAGCGGGATGAAGATCCTCTATACGTTTTCGAT 901
Query 121 GACAAGTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GACAAGTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTT 961
Query 181 CAAGAAGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCGTACAGATGGCTTATA 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 962 CAAGAAGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCATACAGATGGCTTATA 1021
Query 241 GTCGGTCCGGAGAGGTCTGGTGCATCTTGGCATGTCGATCCAGCTCTTACCAGCGCCTGG 300
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1022 GTTGGTCCGGAGAGGTCTGGTGCATCTTGGCATGTTGACCCAGCTCTTACCAGCGCCTGG 1081
Query 301 AACACCCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTTTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1082 AACACCCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTCTA 1141
Query 361 GGTGTTACAGTTCATGTAAATGAAGATGACGGTGATGTCAGCATCGACACCCCCTCATCT 420
||||||||||| ||||| ||||||||||| |||||||||||||| || || |||||||||
Sbjct 1142 GGTGTTACAGTCCATGTCAATGAAGATGATGGTGATGTCAGCATTGATACACCCTCATCT 1201
Query 421 CTGCAGTGGTGGCTAGACTATTATCCCCTCCTTGCGGACGAAGACAAACCAATTGAGTGC 480
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1202 CTGCAGTGGTGGCTAGACTATTATCCCCTTCTTGCGGACGAAGACAAACCGATTGAGTGC 1261
Query 481 ACACTACTAGCTGGTGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAAT 540
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 ACACTACTACCTGGCGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAAT 1321
Query 541 CTTGAACCAACAGTAGCTGTTACCCAGAATTTTGTGAACAAAGAAAATTTTGGGTTCGTG 600
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1322 CTTGAACCAACAGTGGCTGTTACCCAGAATTTTGTGAACAAAGAAAACTTTGGGTTCGTG 1381
Query 601 TGTTTGGATATGGCGCCTGGTTACCATCACAAAGGGGTTTGCCGTGCTGGGCTTCTTGCT 660
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1382 TGCTTGGATATGGCGCCTGGTTACCATCACAAAGGAGTTTGCCGTGCTGGGCTTCTTGCT 1441
Query 661 CTCGATGATGAAAATTCTGAAGATTTGGAA-AATGATACACATGATGAGGACGACAATAC 719
|| ||||||||||||||||||||||||||| || || ||||| ||||| || || |||||
Sbjct 1442 CTTGATGATGAAAATTCTGAAGATTTGGAAGAA-GAAACACACGATGAAGAAGATAATAC 1500
Query 720 TTTAAGCTACTCAGACCTTACCAGGAAAGAGAAGAGGATACGGATGAATGGAGGGGGAGA 779
||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1501 TTTGAGCTATTCAGACCTTACCAGGAAAGAGAAGAGGACACGGATGAATGGAGGTGGAGA 1560
Query 780 GACTGAAAACCAAGAAGAGGATGCT-AATGGAGTATTAAAGAGATACAATATGTGGAAAA 838
||||||||||| |||||||||| | |||||||||| |||||||| ||||||||||| |
Sbjct 1561 GACTGAAAACCGCGAAGAGGATG-TGAATGGAGTATCGAAGAGATATAATATGTGGAAGA 1619
Query 839 ATGGATTCTCGTATAATATTGATTTCCTGGCTTCATTTCTTGATAAAGAAAGAGACCATT 898
||||||| || ||| |||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1620 ATGGATTTTCATATGATATCGATTTCCTCGCTTCATTTCTTGATAAAGAAAGAGATCATT 1679
Query 899 ATAATTTCCCATGGTCAATGGGGAACTCTGTAGGTCAACGAGAAATGAGAGCCTGGCTAT 958
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1680 ACAATTTCCCATGGTCAATGGGGAACTCTGTAGGCCAACGAGAAATGAGAGCCTGGCTAT 1739
Query 959 CCAAGCTTAGGGCTATGAAGCCTGAGATGAGAGAACTAATATGGAAGG 1006
|||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 1740 CCAAGCTTTGGGTTCTGAAGCCTGAGATGAGAGAACTAATATGGAAGG 1787
Score = 1441 bits (780), Expect = 0.0
Identities = 900/957 (94%), Gaps = 11/957 (1%)
Strand=Plus/Plus
Query 1163 AGCTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTG 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 AGCTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTG 2048
Query 1223 AAGTTCTAGAAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCCTGGG 1282
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2049 AAGTTCTAGCAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCTTGGG 2108
Query 1283 ATGGCAAGAGAATCCCAGACATTATCTCTAGCTCCAATTTCGATTTTGATGCATCCATGT 1342
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2109 ATGGCAAGAGAATCCCAGATATTATCTCTAGCTCCAGTTTCGATTTTGATGCATCCATGT 2168
Query 1343 TGAACAGCGAATTCCCATTTGGTATTTGGAACAAAACACTACGTGAACATAGAAACCAGG 1402
| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 2169 TAAACAGCGAATTCCCATTTGGTATTTGGAATAAAACGCTACGTGAACATAAAAACCAGG 2228
Query 1403 GGAAGCCAGCACCCGCACCCGATTCTTTCGGTTCATTGAGTTCACATGTTTGGCCGTATA 1462
||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||
Sbjct 2229 GGAAGCCAGCACCCG-A-----TTCTTTTGGTTCATTGAGTTCACATGTTTGGCCATATA 2282
Query 1463 TTATAACCAAAAGATGCAAAGGGAAGATTTTCGCCCAACTAAGAGATGATCTAACGTGGA 1522
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2283 TTATAACCAAAAGATGCAAAGGGAAGATTTTTGCCCAACTAAGAGATGATCTAACCTGGA 2342
Query 1523 ACGATGCTCAGAACTTGGCTTCCTTTCTGGGACAACAACTACGCAACCTTCATCTACTTC 1582
|||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2343 ACGACGCTCAGAACCTGGCTTTCTTTCTCGGACAACAACTACGCAACCTTCATCTACTTC 2402
Query 1583 CATATCCACCAGTCACACGTCCGGAGTTGTTGAATATGAATGCTGTTCATGAGGAGTTGA 1642
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2403 CATATCCACCGGTCACACGTCCGGAGTTGTTGAATGTGAATGCTGTTCATGAGGAGTTGA 2462
Query 1643 ACATTCCAGCAGAATGGAAAGTTTTCGTCGATGCTCTGTGCCAAAAGAAGAAAGACGTCA 1702
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2463 ACATTCCAGCAGAATGGAAAGTTTTTGTCGATGCTCTGTGCCAAAAGAAGAAGGACGTCA 2522
Query 1703 CTAGTCGTCTGGAAAACTGGGGAAATCCTATACCTCGTGCTCTGATGACCAAAATAGACG 1762
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 2523 CTAGTCGTCTGGAAAACTGGGGAAATCCGATACCTCGGGCTCTGATGACCAAGATAGACG 2582
Query 1763 AATACATTCCTGATGACTTTTTTGTAGATTTACTCAACGTTTTCAAGGACCCAAATGGTG 1822
|||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 2583 AATACATTCCCGATGACTTTTTTGTAGATTTACTCCACGTCTTCAAGGAGACAAATGGTG 2642
Query 1823 GAGACGAAAGCAAACCCTGCACCTGGATACACTCAGACGTCATGGATGACAACATTCACA 1882
|||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2643 GAGATGAAATCAAGCCCTGCACCTGGATACACTCAGACGTAATGGATGACAACATTCACA 2702
Query 1883 TGGAACCATATTCAGATGATTCAGTTGATGGTCAACACAATTCATGGCGTCCCAGTCATA 1942
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2703 TGGAACCATACGCAGATGATTCAGTTGATGGTCAACACAACTCATGGCGTCCCAGTCATA 2762
Query 1943 TTCTCGACTTTAGCGATTTATCCATAGGAGATCCCATCTGCGACTTGATACCAATATACT 2002
|||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2763 TTCTTGACTTCAGCGATTTAACCATAGGAGATCCCATCTGCGACTTGATACCAATATACT 2822
Query 2003 TGGACGTCTTTAGAGGAGACGCTGATCTT-TTCAAGAAGCTTCTAGAAAGTTACGGGCTT 2061
||||||||||||||||||||||||||||| || |||||||||||||||| ||| || |||
Sbjct 2823 TGGACGTCTTTAGAGGAGACGCTGATCTTCTT-AAGAAGCTTCTAGAAAATTATGGACTT 2881
Query 2062 CCAATAATCAGAAGTAGATCCCCGGAGGGGAACGGAACAACAAAAACAACAGACAGT 2118
||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||
Sbjct 2882 CCATTAATCAGAAGTAGATCTTCAGAG---AACGGAACAACAAAAACAGCAGACAGT 2935
Score = 169 bits (91), Expect = 1e-40
Identities = 110/119 (92%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 2117 GTGTTACTGTATATTACCATGAAGAGAATGTTTTGGGTGCAATGTTCGGTATTTGGGACG 2176
|||||||||||||||| |||||||| ||||| |||||| |||| ||| ||||||||||||
Sbjct 2974 GTGTTACTGTATATTA-CATGAAGAAAATGTGTTGGGTTCAATATTCAGTATTTGGGACG 3032
Query 2177 AACTTCGTACAGCTGAATCATGGGAACAAGTTGAGCAAAACTGTTTGGAGTCTACTTAA 2235
||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3033 AACTTCGGACTGCTGAATCATGGGAACAAGTTGAGCAAA-CTGTTTGGAGTCTACTTAA 3090
Score = 139 bits (75), Expect = 1e-31
Identities = 79/81 (98%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1006 GTTTATCTGTTGTCGGACTATGCGATCAAACTGTTTGTTGAAGGAGGGCTAGAACAATCT 1065
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 GTTTATCTGTTGTCTGACTATGCGATCAAACTGTTTGTTGAAGGAGGGCTAGAACAATCT 1969
Query 1066 ATGTACGGTCTTGGAACTGAG 1086
|||||||||||||| ||||||
Sbjct 1970 ATGTACGGTCTTGGTACTGAG 1990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110893003905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5