BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359258
Length=3057
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases | ch... 1068 0.0
> AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases |
chr5:26776994-26785104 FORWARD LENGTH=4575
Length=4575
Score = 1068 bits (578), Expect = 0.0
Identities = 723/794 (91%), Gaps = 6/794 (1%)
Strand=Plus/Plus
Query 1331 ATGATCCGTCTAAGGGCAACAAAACAAAGAAGGGTCCAGCCTATGCTGGAGGATTGGTC- 1389
|||||||||||||||||| ||||||||| || ||||||||||| ||||| ||| |||||
Sbjct 2648 ATGATCCGTCTAAGGGCAGCAAAACAAAAAAAGGTCCAGCCTACGCTGGTGGACTGGTCT 2707
Query 1390 TGGAGCCAAAGAAAGGCTTATATGACAAATATGTGTTGCTTCTCGATTTCAGTAGTCTTT 1449
|||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 2708 TGGAGCCAAAGAGAGGCTTATATGACAAATATGTCTTGCTTCTGGATTTCAATAGTCTTT 2767
Query 1450 ACCCTGTCTATTATACAGGAATATAATATTTGTTTCACGACTATACCACGATCAGAAGAC 1509
||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 2768 ACCCT-TCTATTATACAGGAATACAATATCTGTTTTACGACTATACCACGATCAGAAGAT 2826
Query 1510 GGTGTTCCTCGTTTACCTTCTAGTCAGACTCCTGGAATTCTTCCAAAGTTGATGGAACAT 1569
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2827 GGAGTTCCTCGTTTACCTTCGAGTCAGACACCTGGAATTCTTCCAAAGTTGATGGAACAT 2886
Query 1570 TTGGTCAGTATAAGGAAATGTGTCAAACTAAAGATGAAGAAGGAAACAGATCTCAAGTGC 1629
|||||||||||||||||| | |||||| ||||||||||||||||||||| |||||||| |
Sbjct 2887 TTGGTCAGTATAAGGAAAAGCGTCAAATTAAAGATGAAGAAGGAAACAGGTCTCAAGTAC 2946
Query 1630 CGGGAGCTTGACATTCGGCAGAAGGCATTAAAGCTCACAGCCAATAGTTTATATGGATAT 1689
|||||||||||||||| ||| ||||||| |||||||||||||||||| | ||||| | |
Sbjct 2947 TGGGAGCTTGACATTCGACAGCAGGCATTGAAGCTCACAGCCAATAGTATGTATGGCTGT 3006
Query 1690 CTTGGGTTTTCTAATTCAAGATTCTACGCTAAGCCTTTAGCAGAGCTCATAACACTACAG 1749
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3007 CTGGGGTTTTCTAATTCAAGATTCTATGCTAAGCCTTTAGCAGAGCTCATAACACTACAG 3066
Query 1750 GGAAGGGAGATACTGCAAAGAACTGTGGATCTTGTCCAGAATCATTTAAACCTAGAGGTT 1809
|||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 3067 GGAAGGGATATCCTGCAAAGAACCGTGGATCTTGTCCAGAACCATTTAAATCTAGAGGTA 3126
Query 1810 ATTTATGGTGACACAGATTCAATCATGATTCACAGTGGACTAGATAATATCAAAGAGGTC 1869
|| || ||||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 3127 ATATACGGTGACACAGATTCAATCATGATTCACAGCGGACTAGATGATATTGAAGAGGTG 3186
Query 1870 AAAGCCATTGGAGCAAAAGTCATCCAAGAGGTCAATAAGAAGTATAGATGTCTGAAGATT 1929
||||||||| | |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 3187 AAAGCCATTAAATCAAAAGTCATCCAAGAGGTCAATAAGAAGTATAGATGTCTAAAAATT 3246
Query 1930 GAACT-TGATTGCATATATAAGAGAATGCTTCTTCTTAGAAAAAAGAAGTATGCTGCCAT 1988
|| || |||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct 3247 GA-CTGTGATGGCATATACAAGAGAATGCTTCTTCTTCGAAAAAAGAAGTATGCTGCTGT 3305
Query 1989 CAAGTTGCAGTTCAAGGACGGGAAGATTTGCGAGGACATTGAAAGGAAAGGTGTGGACAT 2048
|||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||| ||
Sbjct 3306 CAAGTTGCAGTTTAAGGATGGGAAGCCTTGCGAGGACATTGAAAGAAAAGGTGTGGATAT 3365
Query 2049 GGTTCGTCGAGATTGGAGCTTGCTCTCCAAGGAAATTGGAGATTTATGCTTG-GCTAAAA 2107
||||||||||||||||||||| ||||| |||||||| |||||||||||| || | |||||
Sbjct 3366 GGTTCGTCGAGATTGGAGCTTACTCTCGAAGGAAATAGGAGATTTATGCCTGAG-TAAAA 3424
Query 2108 TCTTGTATGGAGGA 2121
||||||||||||||
Sbjct 3425 TCTTGTATGGAGGA 3438
Score = 654 bits (354), Expect = 0.0
Identities = 512/585 (88%), Gaps = 23/585 (4%)
Strand=Plus/Plus
Query 2120 GAATGAGGCAACGTGGTTATAAAAAAGGTTTCAGTGCTAAGGATACCGTACCGTATATAA 2179
||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||
Sbjct 3608 GAATGAGGCAACGTGGTTATAAAGAAGGTTTCAATGCTAAGGATACTGTACCGTATATAA 3667
Query 2180 TCTGCTATGAACAGGGTAGTACTAGCT-TAGCAAGCTCAGCAGGGATTGCCGAACGTGCT 2238
|||||||||| ||||||| | |||||| | || || |||||||| |||||||||||||||
Sbjct 3668 TCTGCTATGAGCAGGGTAATGCTAGCTCT-GCTAGTTCAGCAGGAATTGCCGAACGTGCT 3726
Query 2239 AGGCATCCTGATGAGGTGAAATCAGATGACAACAGATGGTTGGTTGACATAGATTACTAC 2298
|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 3727 AGGCATCCTGATGAGGTGAAATCAGAAGGCAGCAGATGGTTGGTTGACATAGATTACTAC 3786
Query 2299 TT-GTCACAGCAGATTCATCCGGTGGTATCTCGTTTATGCGCAGAGATTCAGGGCACAAG 2357
|| | |||| ||||||||||||||||| |||||| |||||||||||||||| || |||||
Sbjct 3787 TTAG-CACAACAGATTCATCCGGTGGTGTCTCGTCTATGCGCAGAGATTCAAGGAACAAG 3845
Query 2358 TCCTGAGAGGT-TAGCTGAGTGTTTAGGACTTGACCCATCAAAGTATCGAAGCAGATCAA 2416
|||||| | || ||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 3846 TCCTGA-ACGTCTAGCTGAATGTTTAGGACTTGACCCATCAAAGTACCGAAGCAAATCAA 3904
Query 2417 ACGTTACTACGTGTAGTGATCCTTCTACATCCCTCTTGTGT-GCTACGAGCGATGAAGAA 2475
||| | |||| | |||||||| ||||| |||||||| | | || || ||||||||||||
Sbjct 3905 ACGATGCTACAAGCAGTGATCCCTCTACCTCCCTCTTAT-TCGCAACAAGCGATGAAGAA 3963
Query 2476 AGATATAAAAGCTGTGAGCCGTTAGTATTAGCATGCCCTAGCTGCTC-AGCTGCTTTCAA 2534
||||||||||| || ||||| |||| |||| ||||||| |||||||| | ||||||||||
Sbjct 3964 AGATATAAAAGTTGCGAGCCTTTAGCATTAACATGCCCCAGCTGCTCTA-CTGCTTTCAA 4022
Query 2535 CTGTCCATCGATTACTACCTCAGTTTGTGCGTCGATCAGTAACAAA--T-C------TGA 2585
||||||||| |||| || || ||||||||||| |||||||| ||| | | |||
Sbjct 4023 CTGTCCATCTATTATTAGTTCTGTTTGTGCGTCAATCAGTAAGAAACCTGCAACACCTGA 4082
Query 2586 AACAGAGGAATCTGATTCTATATTCTGGCTTAAACTGCGTTGCCCGAAATG-CGAAGCAG 2644
|||||||||||||||||| | ||||||||||||||||| |||||||||||| | | ||||
Sbjct 4083 AACAGAGGAATCTGATTCCACATTCTGGCTTAAACTGCATTGCCCGAAATGTC-A-GCAG 4140
Query 2645 -AAGGTAGCACGAGAAGAATATCCCCTGCAATGATAGCTAACCAG 2688
||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 4141 GAAGATAGCACGGGAATAATATCCCCTGCAATGATAGCTAACCAG 4185
Score = 353 bits (191), Expect = 5e-96
Identities = 290/335 (87%), Gaps = 17/335 (5%)
Strand=Plus/Plus
Query 993 AGGTCAGTTATTCGTTAATAGACCTTTCAAAGACACAGCTAAACCGGGAC---------- 1042
||||||||||||| |||| ||||| |||||||||||||| |||||||||
Sbjct 2234 AGGTCAGTTATTCTTTAACGGACCTCTCAAAGACACAGCTGAACCGGGACAGGAAAGAGA 2293
Query 1043 -A--GCCTAATGATATTCCCAAAATGTTTCAGTCATCTAAAACACTTGTGGAACTTATTG 1099
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2294 TAGCGCCTAATGATATTCCCAAAATGTTTCAGTCATCCAAAACACTTGTGGAACTTATTG 2353
Query 1100 AATGTGGTGAGACAGATGCATGGTTATCCATGGAGCTCATGTTTCATCTAAATGTTCTTC 1159
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2354 AATGTGGTGAGACGGATGCATGGTTATCCATGGAGCTCATGTTTCATCTAAGTGTTCTTC 2413
Query 1160 CTCTCACTCTCCAGCTTACCAACATAAGTGGCAATCTCTGGGGGAAAACTCTTCAGGGAG 1219
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 2414 CTCTCACTCTCCAGCTTACTAACATAAGTGGCAATCTTTGGGGGAAAACACTTCAAGGAG 2473
Query 1220 GCAGCGCGCAAAGAAAT-GAATTGGT-CTTACGACATACATACCACTGGAAAAAGTTCAT 1277
||| || || |||| | |||| | ||||| |||||||| ||||| ||||||||||||
Sbjct 2474 CCAGGGCACAGAGAA-TCGAATAC-TACTTACTACATACATTCCACTCGAAAAAGTTCAT 2531
Query 1278 TCTTCCAGACAAAATATCGCCTCATATGAAGGAAA 1312
||| || |||||||| || | | |||||||||||
Sbjct 2532 TCTCCCTGACAAAATTTCACAACGTATGAAGGAAA 2566
Score = 182 bits (98), Expect = 2e-44
Identities = 129/144 (90%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 2915 AGATGGATGTTGGTGTCAGAATTCAAGTAGAGAAAGCAATGACGAAGATAAGACCTGCGG 2974
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4433 AGATGGATGTTGGCGTGAGAATTCAAGTAGAGAAAGCAATGACGAAGATAAGACCTGCGG 4492
Query 2975 TTGAGTCAGCAGCATCCATGGCTCGAAGTA-TACGAGACCGGTGTGGGTACGGATGGCTG 3033
|| ||||||||||| | || ||||||||| || |||||||||||| || |||||| ||
Sbjct 4493 TTAAGTCAGCAGCAGCAATCACTCGAAGTAGTA-GAGACCGGTGTGCTTATGGATGGATG 4551
Query 3034 CAACTGACAGACATAGCCATTTGA 3057
||||| |||||||||| |||||||
Sbjct 4552 CAACTCACAGACATAGTCATTTGA 4575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152005837290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5