BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359264
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31955.1 | Symbols: CNX2 | cofactor of nitrate reductase and... 1258 0.0
> AT2G31955.1 | Symbols: CNX2 | cofactor of nitrate reductase and
xanthine dehydrogenase 2 | chr2:13584139-13586589 REVERSE
LENGTH=1605
Length=1605
Score = 1258 bits (681), Expect = 0.0
Identities = 783/832 (94%), Gaps = 7/832 (1%)
Strand=Plus/Plus
Query 1 ATGAGGAGGTGCTTCTCCAAAATTACTGATTGCTACTTGGGTTTCAAGAATTCCAACTTC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 106 ATGAGGAGGTGCTTCTCCAAAATTACTGATTGCCACTTGGGTTTCAAGAATTCCAACTTC 165
Query 61 TTCTTGGTTGGTTCTGAAGTTGGGTCAGGTTCAGTTACAAGAACCA-T--TACTACTACT 117
|| |||||||||||||||||||| ||||||||||| || ||||||| | ||||||||||
Sbjct 166 TTATTGGTTGGTTCTGAAGTTGGTTCAGGTTCAGTAACGAGAACCATTACTACTACTACT 225
Query 118 AGTGAGCGTTCATTTAGCACTAGTTATGCAGCTCATCAAGTTGATCAGACCAAAGACAGT 177
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 226 AGTGAGCGTTTATTTAGCAGTAGTTATGCAGCTCATCAAGTTGATCAGATAAAAGACAAT 285
Query 178 CCTGTCTCTGACATGTTGATTGATTCTTTTGGTCGGTTACATACCTACTTGAGAATATCT 237
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 286 CCTGTCTCTGACATGTTGATTGATAAATTTGGTCGCTTACATACCTACTTGAGGATATCT 345
Query 238 TTGACAGAGCGGTGTAACCTCCGGTGTCAGTATTGTATGCCTTCTGAAGGTGTGGAGCTT 297
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 346 TTGACTGAGCGGTGTAATCTCCGGTGTCAGTATTGTATGCCGTCTGAAGGTGTGGAACTT 405
Query 298 ACTCCTAAGCCCCAGTTGTTGTCACAGTCTGAGATTGTTAGGTTGGCTGGTCTTTTTGTT 357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ACTCCTAAGCCTCAGTTGTTGTCACAGTCTGAGATTGTTAGGTTGGCTGGTCTTTTTGTT 465
Query 358 TCTGCTGGGGTTAACAAGATTCGGTTGACCGGTGGTGAGCCTACCATTAGGAATGATATC 417
|||||||| |||||||||||||||||||| ||||| |||||||| ||||||| ||||||
Sbjct 466 TCTGCTGGTGTTAACAAGATTCGGTTGACTGGTGGCGAGCCTACGGTTAGGAAAGATATC 525
Query 418 GAAGAGATTTGTCTCCAGTTGTCTAGTTTAAAAGGGTTGAAGAATCTGGCTATTACTACC 477
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 526 GAAGAGATTTGTCTGCAGTTGTCTAGTTTAAAAGGGTTGAAGAATTTGGCTATTACTACC 585
Query 478 AACGGTATCACTCTTGCGAAAAAGCTACCTAA-GCTTCAA-GAATGCGGGCTTGATTCGC 535
||||||||||||||||||||||| ||||| || |||| || |||||||| ||||||||||
Sbjct 586 AACGGTATCACTCTTGCGAAAAAACTACC-AAGGCTT-AAGGAATGCGGACTTGATTCGC 643
Query 536 TAAATATTAGCTTGGATACTTTGGTCCCAGCAAAGTTTGAGTTTCTGACTAGGCGTAAAG 595
| ||||| |||||||||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 644 TGAATATCAGCTTGGATACTCTGGTTCCAGCAAAGTTTGAGTTTCTGACTAGACGTAAAG 703
Query 596 GGCACGATAGGGTTATGAAATCGATTGATACTGCTATTGAGCTTGGATACAATCCTGTGA 655
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GGCATGATAGGGTTATGAAATCGATTGATACTGCTATTGAGCTTGGATACAATCCTGTGA 763
Query 656 AAGTCAATTGTGTTGTCATGAGGGGATTGAATGATGATGAGATTTGTGATTTTGTGGAGT 715
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 764 AAGTCAATTGTGTTATCATGAGGGGATTGAATGATGATGAGATTTGTGATTTTGTTGAGT 823
Query 716 TGACACGCGAGAAGCCAATCAATGTTCGGTTCATCGAGTTTATGCCATTTGATGGAAATG 775
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 824 TGACACGCGACAAGCCAATCAATGTCCGGTTCATCGAGTTTATGCCATTTGATGGAAATG 883
Query 776 TTTGGAACGTGAAGAAACTTGTGCCTTATGCAGAAGTGATGGATAAAGTGGT 827
||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 884 TTTGGAATGTGAAGAAACTTGTACCTTATGCAGAAGTGATGGATAAAGTGGT 935
Score = 246 bits (133), Expect = 3e-64
Identities = 147/154 (95%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 825 GGTTAGTTTGAGAGATCCTCTCCGGTCTGGTGCTGATGACGAGGCACTCAGGGAAATTAT 884
||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1125 GGTTAGTCTGAGAGATCCTCTCCGGTCTGGTGCTGATGATGAGGCGCTAAGGGAAATTAT 1184
Query 885 AGGCGCTGCTGTGAAGAGGAAGAAAGCCGCACACGCTGGAATGCTTGACATTGCCAAAAC 944
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1185 AGGCGCTGCTGTGAAGAGAAAGAAAGCTGCACACGCTGGAATGCTTGACATTGCTAAAAC 1244
Query 945 AGCTAATAGACCAATGATACACATTGGTGGCTAA 978
||||||||||||||||||||||||||||||||||
Sbjct 1245 AGCTAATAGACCAATGATACACATTGGTGGCTAA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5