BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359273

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)...   209    2e-53


> AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) 
family protein | chr1:4348498-4350867 FORWARD LENGTH=1812
Length=1812

 Score =  209 bits (113),  Expect = 2e-53
 Identities = 147/164 (90%), Gaps = 0/164 (0%)
 Strand=Plus/Plus

Query  212  GTGGGGAACGGAGATCTGTTAGGAGACAAGGTTTGATAGAATCGGCGAGGTTTCTGAGTT  271
            ||||||||||||||||||| ||||||||||| |||| |||| | ||||||||||| ||| 
Sbjct  364  GTGGGGAACGGAGATCTGTCAGGAGACAAGGGTTGAGAGAAGCTGCGAGGTTTCTTAGTC  423

Query  272  GTGCAAGTAGCGGACGTGTGATGAGGGAGCCGTCTATGCTTGTGAGGGAGGCTGCGGCGG  331
            |||| ||||||||||| |||||| | ||||| |||||||||||||| || || |||||||
Sbjct  424  GTGCTAGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGG  483

Query  332  AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTTTAAGCCT  375
            ||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  484  AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCT  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30994468699


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5