BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359290
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16550.1 | Symbols: | unknown protein; Has 30201 Blast hits... 566 1e-160
> AT5G16550.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5405350-5406887
FORWARD LENGTH=1172
Length=1172
Score = 566 bits (306), Expect = 1e-160
Identities = 351/372 (94%), Gaps = 5/372 (1%)
Strand=Plus/Plus
Query 193 GGTTCGATTTTGTTCCCAAATTCGAAAACTGGTGATGCGTCGTCTTCGTTTCTTGAACGT 252
||||||||| |||| ||| |||||||||| |||||| | ||||||||||||||||||||
Sbjct 354 GGTTCGATTCTGTTTCCAGATTCGAAAACCGGTGAT--G-CGTCTTCGTTTCTTGAACGT 410
Query 253 GTAAGAAACTCCGTCGCCGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGA 312
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GTAAGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGA 470
Query 313 CGCGAGATTCTTCTATGGACTCGTAGAAGCAGCTCGCTTCGTGCTCTGCTTGTCATCACT 372
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 471 CGCGAGATTCTTCTCTGGACTCGTAGAGGCAGCTCGCTTCGTGCTCTGCTTGTCATCACT 530
Query 373 ATGGGAACAATATTTCTTCTT-ACAACAATGGCTTTGGTTGTCTTCACACTCTTCTTTGT 431
|||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 531 ATGGGAACAATAGTTCTT-TTGACAACAATGGCTTTGGTTGTATTCACACTCTTCTTTGT 589
Query 432 AGCTGCAACAGCTAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGAGG 491
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 590 AGCTGCAACAGCCAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGTGG 649
Query 492 CTTCTTGGCATTCTTCTTTCTTTGCTTGACTGGTACTTACATTGGAGCCTTATCGGTTGC 551
|||||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 650 CTTCTTGGCACTCTTCTTTCTCTGCTTGACTGGTGTTTACATTGGAGCCTTATCCGTTGC 709
Query 552 TGCATTCGTCAT 563
||||||||||||
Sbjct 710 TGCATTCGTCAT 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27377610115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5