BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359293
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39130.1 | Symbols: | Transmembrane amino acid transporter ... 1496 0.0
> AT2G39130.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr2:16322956-16327266 REVERSE LENGTH=2067
Length=2067
Score = 1496 bits (810), Expect = 0.0
Identities = 875/907 (96%), Gaps = 2/907 (0%)
Strand=Plus/Plus
Query 4 TGCTGTGTGGAATATATAATATTGGAGAGTGATAATTTGTCTTCATTATATCCAAATGCT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TGCTGTGTGGAATATATAATATTGGAGAGTGATAATTTGTCTTCATTATATCCAAATGCT 1006
Query 64 GCCTTAAGTATTGGAGGGTTTCAGTTAGATGCCCGCCATCTATTTGCATTGCTAACCACT 123
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1007 GCCTTAAGTATTGGAGGATTTCAGTTAGATGCACGCCATCTATTTGCATTGCTAACCACT 1066
Query 124 CTCGCGGTTCTCCCCACCGTTTGGCTCAGAGATCTCAGTGTACTGAGTTATATCTCAGCT 183
||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1067 CTCGCCGTTCTCCCCACCGTTTGGCTCAGAGATCTCAGCGTACTTAGTTATATCTCTGCT 1126
Query 184 GGAGGGGTGATTGCATCGGTGCTAGTGGTTTTGTGTTTGTTTTGGATTGGTTTGGTAGAT 243
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1127 GGAGGGGTGATTGCATCAGTGCTAGTGGTTTTATGTTTGTTTTGGATTGGTTTGGTAGAT 1186
Query 244 GAAGTTGGAATTCACAGCAAAGGAACTACACTAAACTTGTCAACTTTACCTGTAGCTATA 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1187 GAAGTTGGAATTCACAGCAAAGGAACTACACTAAACTTGTCAACATTACCTGTGGCTATA 1246
Query 304 GGACTATATGGTTACTGCTACTCAGGACATGCTGTTTTTCCCAACATTTATACTTCTATG 363
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1247 GGACTCTATGGTTACTGCTACTCAGGACATGCTGTTTTCCCCAATATTTATACTTCTATG 1306
Query 364 GCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGTTTTGGTATTTGTACTCTGATG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGTTTTGGTATTTGTACTCTGATG 1366
Query 424 TATGCCGGCGTCGCTGTTATGGGTTATACGATGTTTGGAGAATCAACACAATCACAGTTT 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1367 TATGCCGGCGTCGCTGTTATGGGTTATACGATGTTTGGAGAATCAACACAGTCACAGTTT 1426
Query 484 ACTCTCAACTTGCCTCAAGATTTGGTTGCTACTAAGATTGCCGTGTGGACTACGGTGGTC 543
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct 1427 ACTCTCAACTTGCCTCAAGATTTAATTGCAACTAAGATTGCTGTGTGGACTACGGTGGTC 1486
Query 544 AATCCATTTACCAAATATGCTTTGACCATTTCTCCAGTAGCAATGAGTCTTGAGGAGTTG 603
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1487 AATCCATTTACCAAATATGCTTTGACCATATCTCCAGTAGCAATGAGTCTTGAGGAGTTG 1546
Query 604 ATACCATCAAGGCATATAAGGTCACATTGGTACGCCATCGGCATTAGAACCGC-ATTGGT 662
||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1547 ATACCATCAAGGCATATCAGGTCACATTGGTACGCCATCGGCATTAGAACC-CTATTGGT 1605
Query 663 CTTCTCTACGCTGCTTGTTGGTCTTGCAATTCCCTTCTTTGGTCTTGTCATGTCATTGAT 722
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1606 CTTCTCTACTCTGCTTGTTGGTCTCGCTATTCCCTTCTTTGGTCTTGTCATGTCATTGAT 1665
Query 723 TGGATCGTTGTTGACTATGCTCGTCACTCTAATACTTCCTCCAGCGTGTTTCTTGAGCAT 782
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1666 TGGATCGTTGTTGACTATGCTCGTCACTCTAATACTTCCTCCAGCTTGTTTCTTGAGCAT 1725
Query 783 CGTACGGAGAAAAGTTACCCCGACCCAGATGATGTTGTGTGTATTAATCATCATAGTAGG 842
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1726 TGTAAGGAGAAAAGTTACCCCGACCCAGATGATGTTGTGTGTCTTAATCATCATAGTAGG 1785
Query 843 AGCAATATCTTCAGTCATTGGCTCATATTCAGCTCTCTCCAAGATCGTTGAGAAATTGAG 902
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1786 AGCAATATCTTCAGTCATTGGCTCATATTCAGCTCTTTCCAAGATCGTTGAGAAATTGAC 1845
Query 903 CAGCTGA 909
|| ||||
Sbjct 1846 CAACTGA 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5