BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359318

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65600.1 | Symbols:  | Concanavalin A-like lectin protein ki...   237    1e-61
  AT4G35295.1 | Symbols:  | homoserine kinase, putative / HSK, pu...  69.4    5e-11


> AT5G65600.1 | Symbols:  | Concanavalin A-like lectin protein 
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028

 Score =  237 bits (128),  Expect = 1e-61
 Identities = 169/187 (90%), Gaps = 9/187 (5%)
 Strand=Plus/Plus

Query  292  AAGGTGCCTATACGGAGTCATAGAACTGGTAAGGCTTCAAATTTCAACACCAGTTTCTCT  351
            |||||||||||| ||||||||| |||||||||||||||| |||||| |||||||||||| 
Sbjct  250  AAGGTGCCTATATGGAGTCATAAAACTGGTAAGGCTTCAGATTTCAGCACCAGTTTCTCC  309

Query  352  TTCAAAATCGATGCTCGTAACCTTTCAGCAGATGGTCATGGAATCTGTTTCTTTCTTGCT  411
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  310  TTCAAAATCGATGCTCGTAATCTTTCAGCAGATGGTCATGGAATCTGTTTCTTTCTTGCT  369

Query  412  CCT-------C--AACTCCCTGCATACTCAGTTGGTGGTTTCTTGAGTTTGTTCACTCGA  462
            |||       |  |||| |||||||||||||||||||||||||||| |||||||||||| 
Sbjct  370  CCTATGGGAGCTCAACTACCTGCATACTCAGTTGGTGGTTTCTTGAATTTGTTCACTCGG  429

Query  463  AAGAATA  469
            |||||||
Sbjct  430  AAGAATA  436


> AT4G35295.1 | Symbols:  | homoserine kinase, putative / HSK, 
putative | chr4:16795333-16796223 FORWARD LENGTH=336
Length=336

 Score = 69.4 bits (37),  Expect = 5e-11
 Identities = 46/50 (92%), Gaps = 2/50 (4%)
 Strand=Plus/Minus

Query  753  TGTAGCCTCGAGCTCTGTTTCTGCAATCACA-A-GCTGCTCTTTCGTTTG  800
            ||||||||||||||||||||||||||||||| | |||||||| | |||||
Sbjct  102  TGTAGCCTCGAGCTCTGTTTCTGCAATCACACAAGCTGCTCTATGGTTTG  53



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38981698072


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5