BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359324
Length=401
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43370.1 | Symbols: APT1, PHT2, PHT1;2 | phosphate transport... 636 0.0
AT5G43350.1 | Symbols: ATPT1, PHT1;1 | phosphate transporter 1;... 636 0.0
AT5G43360.1 | Symbols: PHT3, ATPT4, PHT1;3 | phosphate transpor... 492 1e-138
> AT5G43370.1 | Symbols: APT1, PHT2, PHT1;2 | phosphate transporter
2 | chr5:17415772-17417798 FORWARD LENGTH=1621
Length=1621
Score = 636 bits (344), Expect = 0.0
Identities = 383/402 (95%), Gaps = 2/402 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAAAAACAACTAGGAGTGCTAAAGGCACTCGATGTTGCGAAGACGCAACTTTAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 ATGGCTGAACAACAACTAGGAGTGCTAAAGGCACTCGATGTTGCGAAGACGCAACTTTAT 106
Query 61 CATTTCACGGCGATTGTCATCGCCGGTATGGGTTTCTTTACCGATGCGTACGATCTTTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 CATTTCACGGCGATTGTCATCGCCGGTATGGGTTTCTTTACCGATGCGTACGATCTTTTT 166
Query 121 TGCGTGTCCTTGGTCACCAAGCTCCTTGGCCGAATCTACTACTTCGACCCG-ACGTCAGC 179
|||||||||||||| || |||||||||||||| |||||||||||| | ||| | ||||||
Sbjct 167 TGCGTGTCCTTGGTAACAAAGCTCCTTGGCCGCATCTACTACTTCAATCCGGA-GTCAGC 225
Query 180 GAAGCCTGGCTCACTTCCCCCTCATGTTGCGGCCGCGGTCAACGGTGTGGCCCTCTGTGG 239
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 226 GAAGCCTGGCTCACTTCCCCCTCATGTTGCGGCCGCTGTCAATGGTGTGGCCCTTTGTGG 285
Query 240 AACCCTTTCTGGTCAACTCTTCTTCGGATGGCTCGGTGACAAACTCGGAAGGAAAAAAGT 299
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 286 AACCCTTTCTGGTCAACTCTTCTTCGGTTGGCTCGGTGACAAACTCGGACGGAAAAAAGT 345
Query 300 GTACGGTCTCACTTTGATCATGATGATCGTGTGCTCTGTCGCTTCTGGTCTCTCCTTTGG 359
||||||||| |||||||||||||||||| | ||||||||||||||||| ||||| |||||
Sbjct 346 GTACGGTCTTACTTTGATCATGATGATCTTATGCTCTGTCGCTTCTGGCCTCTCTTTTGG 405
Query 360 CCACGAAGCCAAGGGTGTCATGACCACCCTTTGCTTCTTCAG 401
| ||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CAACGAAGCCAAGGGTGTCATGACCACCCTTTGCTTCTTCAG 447
> AT5G43350.1 | Symbols: ATPT1, PHT1;1 | phosphate transporter
1;1 | chr5:17399789-17401949 REVERSE LENGTH=1783
Length=1783
Score = 636 bits (344), Expect = 0.0
Identities = 383/402 (95%), Gaps = 2/402 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAAAAACAACTAGGAGTGCTAAAGGCACTCGATGTTGCGAAGACGCAACTTTAT 60
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 ATGGCCGAACAACAACTAGGAGTGCTAAAGGCACTCGATGTTGCGAAGACGCAACTTTAT 139
Query 61 CATTTCACGGCGATTGTCATCGCCGGTATGGGTTTCTTTACCGATGCGTACGATCTTTTT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 140 CATTTCACGGCGATTGTCATCGCCGGTATGGGTTTCTTTACCGATGCCTACGATCTTTTT 199
Query 121 TGCGTGTCCTTGGTCACCAAGCTCCTTGGCCGAATCTACTACTTCGACCCG-ACGTCAGC 179
|||||||||||||| || || ||||||||||| |||||||| ||| | ||| | ||||||
Sbjct 200 TGCGTGTCCTTGGTGACGAAACTCCTTGGCCGCATCTACTATTTCAATCCGGA-GTCAGC 258
Query 180 GAAGCCTGGCTCACTTCCCCCTCATGTTGCGGCCGCGGTCAACGGTGTGGCCCTCTGTGG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 259 GAAGCCTGGCTCACTTCCCCCTCATGTTGCGGCCGCGGTCAACGGTGTGGCCCTTTGTGG 318
Query 240 AACCCTTTCTGGTCAACTCTTCTTCGGATGGCTCGGTGACAAACTCGGAAGGAAAAAAGT 299
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 319 AACCCTTTCTGGTCAACTCTTCTTCGGTTGGCTCGGTGACAAACTCGGACGGAAAAAAGT 378
Query 300 GTACGGTCTCACTTTGATCATGATGATCGTGTGCTCTGTCGCTTCTGGTCTCTCCTTTGG 359
|||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 379 GTACGGTCTCACTTTGGTAATGATGATCTTGTGCTCTGTCGCTTCTGGTCTCTCTTTTGG 438
Query 360 CCACGAAGCCAAGGGTGTCATGACCACCCTTTGCTTCTTCAG 401
||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CCACGAAGCCAAGGGTGTCATGACCACCCTTTGCTTCTTCAG 480
> AT5G43360.1 | Symbols: PHT3, ATPT4, PHT1;3 | phosphate transporter
1;3 | chr5:17409524-17411214 FORWARD LENGTH=1566
Length=1566
Score = 492 bits (266), Expect = 1e-138
Identities = 359/404 (89%), Gaps = 6/404 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAAAAACAACTAGGAGTGCTAAAGGCACTCGATGTTGCGAAGACGCAACTTTAT 60
||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCCGATCAACAGCTAGGAGTGCTAAAGGCACTTGATGTTGCGAAGACGCAACTTTAC 60
Query 61 CATTTCACGGCGATTGTCATCGCCGGTATGGGTTTCTTTACCGATGCGTACGATCTTTTT 120
||||||||||| |||||||| ||||||||||| |||||||| || ||||||||||| |||
Sbjct 61 CATTTCACGGCTATTGTCATTGCCGGTATGGGCTTCTTTACGGACGCGTACGATCTCTTT 120
Query 121 TGCGTGTCCTTGGTCACCAAGCTCCTTGGCCGAATCTACTACTTCGACCCGACGTCAGCG 180
|| ||||||||||| |||||||| |||||||| ||||||||||| | || ||||||||
Sbjct 121 TGTGTGTCCTTGGTGACCAAGCTTCTTGGCCGCCTCTACTACTTCAATCCAACGTCAGCA 180
Query 181 AAGCCTGGCTCACTTCCCCCTCATGTTGCGGCCGCGGTCAACGGTGTGGCCCTCTGTGGA 240
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 181 AAGCCTGGCTCACTTCCCCCTCATGTTGCGGCTGCAGTCAACGGTGTGGCCCTTTGTGGA 240
Query 241 ACCCTTTCTGGTCAACTCTTCTTCGGATGGCTCGGTGACAAACTCGGAAGGAAAAAAGTG 300
|||||| | ||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 241 ACCCTTGCCGGTCAACTCTTCTTCGGATGGCTTGGTGACAAACTCGGACGGAAAAAGGTG 300
Query 301 TACGGTCTCACTTTGATCATGATGAT-CGTGTGCTCTGTCGCTTCTGGTCTCTCCTTTGG 359
|||||| ||||||||||||||||||| | | ||||| || ||||| ||||| ||||| ||
Sbjct 301 TACGGTATCACTTTGATCATGATGATTC-TCTGCTCAGTTGCTTCCGGTCTTTCCTTGGG 359
Query 360 CCA--CGAAGCCAAGGGTGTCATGACCACCCTTTGCTTCTTCAG 401
| | || ||||||||||||||||| || ||||||||||||||
Sbjct 360 CAATTCG--GCCAAGGGTGTCATGACGACTCTTTGCTTCTTCAG 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18950941373
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5