BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359335
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32350.1 | Symbols: | Ubiquitin-like superfamily protein | ... 1170 0.0
> AT2G32350.1 | Symbols: | Ubiquitin-like superfamily protein
| chr2:13734945-13735788 FORWARD LENGTH=763
Length=763
Score = 1170 bits (633), Expect = 0.0
Identities = 698/730 (96%), Gaps = 2/730 (0%)
Strand=Plus/Plus
Query 1 ATGGAAATCAGCGAACAAGAATCTGTGTTGGAGGTCAAGAAACGTTTAGGACAGTTTCTT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 35 ATGGAAATCAGCGAACAAGAATCTGTGTTGGAGGTCAAGAAACGTCTAGGACAGTTTCTT 94
Query 61 CAGATCCCAGCATCTTCTTTAACTCTCTTTGTCTCTTGTTGGGAACTCATCGACGGTCTT 120
||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CAGATACCAACATCTTCTATAACTCTCTTTGTCTCTTGTTGGGAACTCATCGACGGTCTT 154
Query 121 GACATCGAAGATTACCCAATCATCTCTCACGGCACCAGAATCGACCTCACCGTGACTCCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 155 GACATCGAAGATTACCCAATCATCTCTCACGGCACCAGAATCGACCTCACCGTAACTCCC 214
Query 181 CTTTTCACCGCACCGTCTTTTATCAAC-CCGGCCATTAGAAAAATCCACGTCACCGTCAA 239
|||||||||||||||||||||||| || ||| || |||| ||||| ||||||||||||||
Sbjct 215 CTTTTCACCGCACCGTCTTTTATCCACGCCG-CCGTTAGGAAAATTCACGTCACCGTCAA 273
Query 240 GTTCCCTTCAAAACAGTTCACCGTTGAAGTAGACAGAACCGAAACGGTAAGTAGCTTGAA 299
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 274 GTTCCCGTCAAAACAGTTCACCGTCGAAGTAGACAGAACCGAAACGGTAAGTAGCTTAAA 333
Query 300 GGACAAGATTCACATTGTGGAGAACACACCGATAAAGCGAATGCAGTTATACTATTCCGG 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 334 GGACAAGATTCACATTGTTGAGAACACACCGATAAAGCGAATGCAGTTATACTATTCTGG 393
Query 360 GATTGAGCTAGCTGATGATTATCGAAACCTAAACGAATATGGAATCAGTGAATTCTCAGA 419
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 394 GATCGAGCTAGCTGATGATTATCGAAACCTAAACGAATATGGAATCACAGAATTCTCAGA 453
Query 420 GATTGTGGTGTTTCTCAAGTCGATCAACCGAGCCAAAGACGTTGCTCCGGTGAGGAAACT 479
||||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct 454 GATTGTGGTGTTTCTTAAGTCAATCAACCGTGCGAAAGACGTCGCTCCGGTAAGGAAACT 513
Query 480 CTGTTTCTTGGTGCAGACGTCATCGAGTTTATTCAACGGTGCGAGGATTCCTGTGGAGAT 539
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 514 CTGTTTCTTGGTGCAGACGTCATCGAGTTTATTCAACGGTGCGCGAATTCCAGTGGAGAT 573
Query 540 TAAGGACACTTGCACCATCTCGGAGATGAGAGAAGGGTTACAAGCTAACAAGACGTTGCC 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 574 TAAGGACACTTGCACCATCTCGGAGATGCGAGAAGGGTTACAAGCTAACAAGACGTTGCC 633
Query 600 ACGAGACGAGTATATATTCGTACACAAGCAACGGATTATGCGAGAGAATTGTAGTCTTCG 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AAGAGACGAGTATATATTCGTACACAAGCAACGGATTATGCGAGAGAATTGTAGTCTTCG 693
Query 660 GTGGCATGGTGTTGAAAATTGTGACACTCTTTTTGTGTTTAAAGGGTCTATTAGTCGTGA 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GTGGCATGGTGTTGAAAATGGTGACACTCTTTTTGTGTTTAAAGGGTCTATTAGTCGTGA 753
Query 720 AGGTTACTGA 729
||||| ||||
Sbjct 754 AGGTTTCTGA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5