BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359343
Length=436
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27350.5 | Symbols: | OTU-like cysteine protease family pro... 597 3e-170
> AT2G27350.5 | Symbols: | OTU-like cysteine protease family protein
| chr2:11699549-11704248 REVERSE LENGTH=2287
Length=2287
Score = 597 bits (323), Expect = 3e-170
Identities = 412/452 (91%), Gaps = 17/452 (4%)
Strand=Plus/Plus
Query 1 ATGACTCGGATTTTGGTTCAACGAGGTTCATCAGGAAGTTCTTCCAACTCGAGCCG---- 56
||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 536 ATGACTCGGATTTTGGTTCAAAGAGGTTCATCAGGCAGTTCTTCCAACTCTAGCCGTCCT 595
Query 57 -----C-C--C---TTCTTCCTCAGGAACAGAACCACAGATAAACAATACTATTCAGGTT 105
| | | ||||||||| ||| ||||| ||||||||||||||| ||||| ||||
Sbjct 596 TCTTCCTCATCTAGTTCTTCCTCGGGATCAGAAACACAGATAAACAATAATATTCCGGTT 655
Query 106 CCTCCTGTTACTATAGATGAAGAAATTACGGATGAGAAACAAGACGAGGTTACTGTAGTT 165
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 656 CCTCCTGTTACTATAGATGAAGAAATTACGGATGAGAAACAAGAAGAGGTTACTGTAGTT 715
Query 166 GAAAAAGTAGAGTGTTCTGATGCTAA-GAATGTAGCTGTGGACAGTAATGAACCTGTGGA 224
||||||| |||||||||||||||||| || |||||||||||||||| ||||||||| |||
Sbjct 716 GAAAAAGCAGAGTGTTCTGATGCTAAAGA-TGTAGCTGTGGACAGTGATGAACCTGCGGA 774
Query 225 TAGAGAAGATGATGAAGGATTGGTAGTTTCAGAAAATGTTCATGTTGAAAGTGAAGGTAT 284
|||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 775 TAGAGAAGATGATGAAGGGTTGGTAGTTGCAGAAAATGTTCATGTTCAAAGTGAAGGTAT 834
Query 285 AGATTGTGATTCTCCAGTTAGTGGTGGCAGTAACCCTGATTCACCACCCGTACCAGCTCC 344
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 835 AGATTGTGATTCTCCAGTTAGCGGTGGCAGTAACTCTGATTCACCACCCGTACCAGCTCC 894
Query 345 ACCACCAAAACCTTCTTCGACTGTCAATCCTGGGAATAACAGATCGGTCTTGGGAAGTTT 404
|||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||
Sbjct 895 ACCACCAAAACCTTCTTCCACTGTCAATCCTGGTAGTAACAGATCGGTTTTGGGAAGTTT 954
Query 405 TGACGCTTTACGAACTGGACCAACACGAAGAG 436
|| ||||||||||| |||||||||||||||||
Sbjct 955 TGGCGCTTTACGAATTGGACCAACACGAAGAG 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20710312588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5