BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359346
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46490.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1153 0.0
AT1G35190.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 507 9e-143
AT3G46480.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 139 4e-32
> AT3G46490.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:17115629-17119451
FORWARD LENGTH=993
Length=993
Score = 1153 bits (624), Expect = 0.0
Identities = 702/739 (95%), Gaps = 7/739 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATAAAACTGAGGAAGATAAGGTATCAATCATCAAAGTTTCTGCCCTTACTTGC 60
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAGAATAAAACTGAGGAAG---AGGTATCAATCATCAAAGTTTCTTCCCTTACTTGC 57
Query 61 ATAGATCTCGACAACTCCAATCTTCATCAATCAGCTGTTTTACTCAAGCAGGCATGTCTC 120
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ATCGATCTCGACAACTCTGATCTTCATCAATCAGCTGTTTTACTCAAGCAGGCATGTCTC 117
Query 121 GATAGTGGATTTTTCTATGTCATTAATCATGGTATAAGCGAGGAACTGAAGGACGAGGCT 180
||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct 118 GATAGTGGATTTTTCTATGTCATAAATCATGGTATAAGTGAGGAACTCAAGGATGAGGCT 177
Query 181 TTTGAACAGAGCAAGAAGTTTTTTGCTCTTCCTTTGGAGGAGAAAATGAAAGTCTTGAGA 240
|| || || ||||||||||| || |||||||||||||| ||||| |||||||||||||||
Sbjct 178 TTCGAGCACAGCAAGAAGTTCTTCGCTCTTCCTTTGGAAGAGAAGATGAAAGTCTTGAGA 237
Query 241 AATGAAAAGTATCGAGGCTATGCACCATTTCACGATTCTCTCTTAGACCCTAAAAACCAA 300
|| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 238 AACGAAAAGTATCGAGGCTATGCACCATTCCATGATTCTCTCTTAGACCCTGAAAACCAA 297
Query 301 TTCCGAGGGGACTACAAAGAGGGTTTTACCATTGGGTTCGAAGGTGGCAAAGATGGTCCC 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 GTCCGAGGGGACTACAAAGAGGGTTTTACCATTGGGTTCGAAGGTAGCAAAGATGGTCCC 357
Query 361 CATGGGGATAAACCATTCCATAGCCCCAACATTTGGCCTAACTCTGACGTTTTGCCCGGA 420
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 358 CATTGGGATAAACCATTCCATAGCCCCAATATTTGGCCTAACCCTGACGTTTTGCCCGGA 417
Query 421 TGGCGGGAGACCATGGAGAAATATTATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGGCGGGAGACCATGGAGAAATATTATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCG 477
Query 481 AGAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTA-TTTCAATACACCGGAGATGCT 539
| |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 478 AAAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTACTTT-AATACACCAGAGATGCT 536
Query 540 GGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAA 596
Query 600 AGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGA 656
Query 660 TGGTGTAATGGGACTTCAGATTTGCAAGGATAAAGACGTGATGCCTCAAAAGTGGGAATA 719
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 657 TGGTGTCATGGGACTTCAGATATGCAAGGATAAAGACGTGAAGCCTCAAAAGTGGGAATA 716
Query 720 TATTCCATC-ACTTAAAGG 737
|| |||||| | |||||||
Sbjct 717 TACTCCATCGA-TTAAAGG 734
> AT1G35190.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:12890423-12892874
FORWARD LENGTH=1353
Length=1353
Score = 507 bits (274), Expect = 9e-143
Identities = 565/702 (80%), Gaps = 34/702 (5%)
Strand=Plus/Plus
Query 36 CATCAAAGTTTC-TGCCCTTACTTGCATAGATCTCGACAACTCCAATCTTCATCAATCAG 94
||| |||||||| | | |||| ||| || ||||| | |||| | ||||| |||| || |
Sbjct 139 CATGAAAGTTTCAT-CTCTTAATTGTATCGATCTAGCCAACGACGATCTTAATCATTCTG 197
Query 95 CTGTTTTACTCAAGCAGGCATGTCTCGATAGTGGATTTTTCTATGTCATTAATCATGGTA 154
||||| ||||| ||||||||| | ||| |||||||||||||||| || |||||||| |
Sbjct 198 TTGTTTCCCTCAAACAGGCATGTTTGGATTGTGGATTTTTCTATGTGATCAATCATGGGA 257
Query 155 TAAGCGAGGAACTGAAGGACGAGGCTTTT-GAACAGAGCAAGAAGTTTTTTGCTCTTCCT 213
||||||| || | | |||||| | |||| || |||||||||||| ||||||||||||||
Sbjct 258 TAAGCGAAGAGTTCATGGACGATG-TTTTCGAGCAGAGCAAGAAGCTTTTTGCTCTTCCT 316
Query 214 TTGGAGGAGAAA-ATGAAAGTCTTGAGAAATGAAAAGTATCGAGGCTATGCACCAT-TTC 271
|| || || ||| |||||||| |||||||| |||||| ||||||||||| |||| | |||
Sbjct 317 TTAGAAGA-AAAGATGAAAGTGTTGAGAAACGAAAAGCATCGAGGCTATACACC-TGTTC 374
Query 272 ACGATTCTCTCTTAGA-CCCTAAAAACCAATTCCGA-GGGGACT-ACAAAGAGGGTT-TT 327
||| || ||||| ||| || || ||| | | | ||||| | |||||||||||| ||
Sbjct 375 TTGATGAACTTTTAGATCCC-AAGAATCAAAT-CAATGGGGA-TCACAAAGAGGGTTATT 431
Query 328 ACCATTGG-GTTCGAAGGTGGC-AAAGATGGTCCCCATGGGGATAAACCATTCCATAGCC 385
| |||||| || ||| || | ||||||| ||| ||| ||||||| |||||| || | |
Sbjct 432 A-CATTGGAATT-GAA-GTTCCTAAAGATGATCCTCATTGGGATAAGCCATTCTATGGTC 488
Query 386 CCAACATTTGGCCTAACT-CTGACGTTTTGCCCGGATGGCGGGAGACCATGGAGAAATAT 444
| ||| ||||||| | | |||| ||||| || || ||||| || || ||||||||||||
Sbjct 489 CTAACCCTTGGCCTGA-TGCTGATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATAT 547
Query 445 TATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCGAGAATAATGGCTTTGGCGCTCGAC 504
||||||||||||||||||||| || | ||||||| ||| | |||| || || || |||
Sbjct 548 CATCAAGAAGCATTGAGGGTTTCTATGGCTATTGCAAGACTTTTGGCGTTAGCACTTGAC 607
Query 505 TTGGATGT-GGATTA-TTTCAATA-CACCGGAGATGCTGGGAAATCCAATTGCAGA-TAT 560
|||||||| ||| || ||| ||| | |||||||||| ||||| || |||||| | |||
Sbjct 608 TTGGATGTGGGA-TACTTT-GATAGGA-CGGAGATGCTTGGAAAACCTATTGCA-ACTAT 663
Query 561 G-GTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAAAGGAATATATGCATGTGGAG 619
| | | |||| | ||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 664 GCGAC-TGTTGCGGTATCAAGGGATTTCTGATCCTTCGAAAGGAATATATGCATGTGGAG 722
Query 620 CACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGATGGTGTAATGGGACTTCAGA 679
|||||||||| |||||||||||| |||| ||||| |||||||||||||||||||| ||||
Sbjct 723 CACATTCTGACTTCGGAATGATGACTCTGTTAGCCACTGATGGTGTAATGGGACTCCAGA 782
Query 680 TTTGCAAGGATAAAGA-CGTGATGCCTCAAAAGTGGGAATAT 720
| ||||| ||||| || || |||||| || ||||||||||||
Sbjct 783 TATGCAAAGATAA-GAACGCGATGCCGCAGAAGTGGGAATAT 823
> AT3G46480.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:17103173-17105594
FORWARD LENGTH=861
Length=861
Score = 139 bits (75), Expect = 4e-32
Identities = 133/161 (83%), Gaps = 4/161 (2%)
Strand=Plus/Plus
Query 185 AACAGAGCAAGAAGTTTTTTGCTCTTCCTTTGGAGGAGAAAATGAAAGTCTTGAGAAATG 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 AACAGAGCAAGAAGTTCTTTGCTCTTCCTTTGGAGGAGAAAATGAAAGTCTTGAGAAATG 163
Query 245 AAAAGTATCGAGGCTATGCACCATTTCACGATTCTC-TCTTAGACCCTAAAAACCAATTC 303
||||| ||||||||||| |||| | | ||| | | ||||| ||| | || ||| ||
Sbjct 164 AAAAGCATCGAGGCTATTCACCCGTCCTTGAT-CAAATTTTAGATCCTGAGAATCAAGTC 222
Query 304 CGAGGG-GACTACAAAGAGGGTTTTACCATTGGGTTCGAAG 343
|| || || |||||||| ||||| |||||| ||||||
Sbjct 223 -GACGGTGATTACAAAGAAAGTTTTTTCATTGGAATCGAAG 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5