BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359357

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77600.3 | Symbols:  | ARM repeat superfamily protein | chr1...   462    7e-130


> AT1G77600.3 | Symbols:  | ARM repeat superfamily protein | chr1:29152751-29162448 
REVERSE LENGTH=4706
Length=4706

 Score =  462 bits (250),  Expect = 7e-130
 Identities = 303/328 (92%), Gaps = 5/328 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAACTCCGACGCAGATTGTTTCCGAACTGGGTTCTCGTTTGCTTCAATTATCT  60
            ||||||||||||||||||||||| ||||||||| |  ||||||| ||||| |||||||||
Sbjct  293  ATGGAGAAAACTCCGACGCAGATAGTTTCCGAATTATGTTCTCGGTTGCTACAATTATCT  352

Query  61   CGTCCCAACAAGGATTCTCTGGTCAAG-TTACTACGGGAAGTTGCTAATACGCTGTC-AC  118
            ||||||||||||||||||||||||||| || |||||||||||||||||||| || || | 
Sbjct  353  CGTCCCAACAAGGATTCTCTGGTCAAGCTT-CTACGGGAAGTTGCTAATACTCTCTCTA-  410

Query  119  AAATCGACCAGCCTTCAGCCACAAACAAGGAAAAAGGTCTGAAACTGTTAGAAGCTGAGT  178
            ||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||||||
Sbjct  411  AAATCGACCAGCCTTCAGCTACCAACAAGGAAAAAGGTTTGAAACTGATAGAAGCTGAGT  470

Query  179  TAAGACCTCTGAAGAAATCCATTATCAAGCATGGTCTTCTTAAAAATCGTGATAACGACG  238
            |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct  471  TAAGACCTCTGAAGAAGTCCATTATCAAGCATGCTCTTCTTAAAAATCGTGATAATGACG  530

Query  239  TGAGTCTCTTGGTCACTGTTTGTGTCTCCGAGCTTTTCCGGATTTTAGCACCTAATCGAC  298
            ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct  531  TGAGTCTTTTGGTCACTGTCTGTGTCTCCGAGCTTTTCCGGATTTTAGCACCTCATCTAC  590

Query  299  CTTTTGAAGACGAATATCTCAGGG-TAT  325
            ||||||||||||| |||||||||| |||
Sbjct  591  CTTTTGAAGACGAGTATCTCAGGGATAT  618



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5