BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359365
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29040.1 | Symbols: | Exostosin family protein | chr2:12472... 2224 0.0
> AT2G29040.1 | Symbols: | Exostosin family protein | chr2:12472425-12474962
REVERSE LENGTH=2163
Length=2163
Score = 2224 bits (1204), Expect = 0.0
Identities = 1376/1460 (94%), Gaps = 8/1460 (1%)
Strand=Plus/Plus
Query 667 GATAACACCTCTGAACCCGAACCAAAAACTCAGAGAAAGTTTT-CATCGAATAATAATAA 725
||||||| |||| || | |||||||||||||||||||| |||| || |||||| |||||
Sbjct 706 GATAACATCTCTAAATCTGAACCAAAAACTCAGAGAAA-TTTTGTATTGAATAAGAATAA 764
Query 726 TAATTCCGAGGCGAAAAACAGAGTAATTTCCAAAAGAAACCAACCTAAAAGAGTCGGAAA 785
|| |||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 765 TACTTCCAAGGCGAAAAACAGAGTAATTTCCAAGAGAAACCAACCTAGTAGAGTCGGTAA 824
Query 786 AGTTATGTTACGGCCAAGAGAAACGCGAAGTAACGATCCATGTAAAGGAAAATATGTGTA 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AGTTATGTTACGGCCAAGAGAAACGCGAAGTAACGATCCATGTAAAGGAAAATATGTGTA 884
Query 846 TATGCACGAAGTTCCAGCTTTGTTTAACGAAGAGCTTCTCAAGAATTGTTGGACATTGAG 905
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 885 TATGCATGAGGTGCCAGCTTTGTTTAACGAAGAGCTTCTCAAGAACTGTTGGACATTGAG 944
Query 906 CAGGTGGACCGATATGTGCGAGTTAACATCGAATTTCGGATTAGGCCCTCGTCTACCAAA 965
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 945 CAGGTGGACTGATATGTGCGAGTTAACGTCGAATTTCGGGTTAGGCCCTCGTCTACCAAA 1004
Query 966 CATGGAGGGAGTTTCTGGTTGGTATGCCACAAACCAATTTACATTAGAAGTGATATTCCA 1025
|||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 1005 CATGGAAGGAGTTTCTGGTTGGTATGCCACAAACCAGTTCACATTGGAAGTAATATTCCA 1064
Query 1026 CAACAGGATGAAGCAATACAAGTGCTTGACCAAAGACTCGTCTCTAGCTTCCGCGGTGTA 1085
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1065 CAACAGGATGAAGCAGTACAAGTGCTTGACCAAAGACTCGTCTTTAGCTTCTGCGGTGTA 1124
Query 1086 TGTTCCTTACTATCCGGGTTTAGACTTGATGCGGTTTTTATGGGGACCGTTCCCTTTCAT 1145
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1125 TGTTCCTTACTATCCGGGTTTAGACTTGATGCGGTTTTTGTGGGGACCGTTCCCTTTCAT 1184
Query 1146 GAGAGATGCTGCAGCGCTTGATCTGATGAAGTGGCTGAGGGAGAGTCCA-GAGTGGAAGA 1204
|||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 1185 GAGAGATGCTGCCGCGCTTGATCTCATGAAGTGGCTGAGGGAGAGT-CAGGAGTGGAAGA 1243
Query 1205 GAATGGACGGCCGAGATCATTTTATGGTGGCTGGTCGTACCACTTGGGACTTTATGCGTA 1264
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1244 GGATGGACGGACGAGATCATTTTATGGTGGCTGGTCGAACCACTTGGGACTTTATGCGTA 1303
Query 1265 CACCTGAGAATGAATCCGATTGGGGCAATAGGTTAATGATCTTACCGGAAGTAAGAAACA 1324
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1304 CACCAGAGAATGAATCCGATTGGGGAAATAGGTTAATGATATTACCGGAAGTAAGAAACA 1363
Query 1325 TGACGATGCTACTAATCGAATCAAGCCCATGGAACTACCACGGATTCGCGGTACCTTACC 1384
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1364 TGACGATGCTACTAATCGAATCAAGCCCATGGAACTACCACGGGTTCGCGGTTCCTTACC 1423
Query 1385 CGACCTATTTCCACCCTTCAACCTACGCAGAGATCATCCAATGGCAGATGAGAATGAGAA 1444
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1424 CGACCTATTTCCACCCTTCAACATACGCAGAAATCATCCAATGGCAGATGAGAATGAGAA 1483
Query 1445 GAATTAATCGTCGTTACCTATTCTCCTTTGTCGGTGCACCACGTCCAAATCTCGGTGACA 1504
||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||||
Sbjct 1484 GAATTAATCGTCGTTACTTATTCTCATTTGTCGGTGCCCCACGACCAAACCTCGGTGACA 1543
Query 1505 GCATAAGAACCGAGATCATGGACCAATGCAAAGCTTCCACAA-GAAAATGCAAGCTTCTA 1563
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 1544 GCATAAGAACCGAGATCATGGACCAATGCAAAGCTT-CAAAACGAAAATGCAAGCTTCTA 1602
Query 1564 GAATGCGTATCGGGTTCTCAAAAATGCTACAAACCCGACCAAATCATGAAATTCTTCTTG 1623
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1603 GAATGCATATCGGGTTCTCAAAAATGCTACAAACCCGACCAAATCATGAAATTCTTTTTG 1662
Query 1624 AGCTCAACATTCTGTCTCCAACCACCCGGTGACTCATACACACGCCGCTCCACTTTCGAC 1683
|||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1663 AGCTCAACGTTCTGTCTTCAACCACCAGGTGACTCATACACACGTCGCTCCACTTTTGAC 1722
Query 1684 TCCATCTTAGCAGGTTGTATACCGGTTTTCTTCCATCCGGGGTCAGCTTACGCTCAATAC 1743
||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||
Sbjct 1723 TCCATCTTAGCAGGTTGTATACCAGTTTTCTTTCATCCGGGATCAGCTTATGCGCAATAC 1782
Query 1744 ATTTGGCATTTACCGAAAGATATCGCGAAATACTCTGTTTTTATACCAGAGAAAAACGTG 1803
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1783 ATTTGGCATTTACCGAAAGATATCGCGAAATACTCTGTTTTTATTCCGGAGAAAAATGTG 1842
Query 1804 AAAGAAGGTAAAGTGAGTATAGAGAATGTTTTGAGTAGGATCCCAAGGACGAAAA-TTTT 1862
|||||||||||||||||||||||||||||||||||||| || || ||||| |||| ||||
Sbjct 1843 AAAGAAGGTAAAGTGAGTATAGAGAATGTTTTGAGTAGAATACCGAGGAC-AAAAGTTTT 1901
Query 1863 CGCGATGAGAGAACAAGTGATCAGACTGATACCGAGGTTAATGTATTTTAACCCGTCGAG 1922
||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1902 CGCTATGAGAGAACAAGTGATAAGACTGATACCGAGGTTAATGTATTTTCACCCGTCGAG 1961
Query 1923 TAAGAGCGAAGACACGGGAAGGTTTGAAGATGCATTCGATGTCGCGGTagaaggagtgtt 1982
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1962 TAAGAGTGAAGACACGGGAAGGTTTGAAGATGCATTCGATGTCGCGGTGGAAGGAGTTTT 2021
Query 1983 ggaaagagtggagggattaaggaagaggatagaggaagggaaagaggagaTTTTCGATTT 2042
||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 2022 GGAAAGAGTGGAGGGGTTAAGGAAGAGGATAGAGGAAGGCAAGGAGGAGATTTTTGATTT 2081
Query 2043 TCCGGAGCAGTATTCTTGGAAATATAATGTGTTTGGGAATGTTGAGAGGCATGAGTGGGA 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 TCCGGAGCAGTATTCTTGGAAATATAATGTGTTTGGGAATGTTGAGAGGCATGAGTGGGA 2141
Query 2103 TCCTTACTTCGATAGGCCTT 2122
||||||||||||| ||||||
Sbjct 2142 TCCTTACTTCGATCGGCCTT 2161
Score = 965 bits (522), Expect = 0.0
Identities = 631/681 (93%), Gaps = 17/681 (2%)
Strand=Plus/Plus
Query 1 ATGGCAATGGAGAAGTCTAGCTCAAAGTACAGAACCCAGTTCTGGTACGTTGCAATGGCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAATGGAGAAGTCTAGCTCAAAGTACAGAACCCAGTTCTGGTACGTGGCAATGGCC 60
Query 61 TCTTTCCTCCTTTGGCTTGTCTTGCTTTACCTTTCTAGTTCTTCCGCTAAAACCGTTCAT 120
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TCATTCCTCCTTTGGCTTGTCTTGCTTTACCTTTTTAGTTCTTCCGCTAAAACCGTTCAT 120
Query 121 AACCACGCGAGATTGTTCCGGCAAGAAAATGTCATCGATCTCCCTATCGAAAACGTCCCA 180
||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 121 AACCACGAGAGATTGTTCCGGCAAGAAAATATCATCGATCTCCCTGTCGAAAACGTCCCA 180
Query 181 CAAAACCACGAATCC-GATGAAGCTCC--T-G-T--CGTTGTCTCTGAGGACATTTCCGT 233
|||||||||||| || ||||||||||| | | | ||||||||||||||||||||||||
Sbjct 181 CAAAACCACGAA-CCTGATGAAGCTCCTGTCGTTAACGTTGTCTCTGAGGACATTTCCGT 239
Query 234 TGATAACAGCTCTCTTCCTGTCTCGGTCGATATAT-CTCCGGATGATCAGATGTCAGAGG 292
||||||||||||||||||||| || |||||| | | |||||||||||||||||||||| |
Sbjct 240 TGATAACAGCTCTCTTCCTGTTTCTGTCGAT-TCTCCTCCGGATGATCAGATGTCAGAAG 298
Query 293 ACAAGAAGGTTGTGACTGATCTCGTTGAAGAACTCGAGAAAGAAAGGGTTGAGAATGAGA 352
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 299 ACAAGAAGGTTGTGACTGATCTCGTTGAAGAACTTGAGAAAGAAAGGGTTGAAAATGAGA 358
Query 353 AGAAGAGAGTTGATTCGGTTATCACAATTGGTCGGTCATCGAGGGCAAGGAGAGGACATC 412
|||||||||||||||||||| | |||||| |||||||| | |||||||||||||||||
Sbjct 359 AGAAGAGAGTTGATTCGGTTGT---AATTGGACGGTCATCTAAGGCAAGGAGAGGACATC 415
Query 413 GAGAGCCACGAAAGGCGAGATCTTCGGGTAGATTGGAGGCAGAAAAGAAAAAGGTTCGTC 472
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 416 GAGAGCCACGAAAGGCGAGATCTTCGGGTAGATTGGAGGCAGAGAAGAAAAGGGTTCGTC 475
Query 473 AAAAGGATGATGATGAGAGCAATGTGGAGAATAGTGATGAGAATCATCAAGCATTAGACA 532
|| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 476 GTAATGATGCTGATGAGAGCAATGCGGAGAATAGTGATGAGAATCATCAAGCATTAGACA 535
Query 533 AAGAACCGAATTTTTTCGAGCCTAGGAAAGACGTGGAACCAAAGAAAGCGCAAGTTGATG 592
|||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 536 AAGAACCGAACTTTTTCGAGGCTAAGAAAGACGTGGAACCAAAGAAAGCGCTAGTTGATG 595
Query 593 ATAATGACGACGAT-TTAGAGAGCAAGAGGGGTAAGGAATTGCCGAATGATT-TGTCCAG 650
|||||||||||||| || |||| |||||| || ||||| ||||||||||||| | |||||
Sbjct 596 ATAATGACGACGATCTT-GAGACCAAGAGAGGCAAGGAGTTGCCGAATGATTCT-TCCAG 653
Query 651 TGATGATGTTGAAGATGATAA 671
| ||| |||||||||||||||
Sbjct 654 TAATGTTGTTGAAGATGATAA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5