BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359368
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1768 0.0
> AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:2181717-2184449 FORWARD LENGTH=2616
Length=2616
Score = 1768 bits (957), Expect = 0.0
Identities = 1031/1067 (97%), Gaps = 4/1067 (0%)
Strand=Plus/Plus
Query 68 TTTGTAAGCACTTATCATCTTTGTCTGATAATGGCGAAAATCATGAGAAACCATATACAT 127
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 26 TTTGTAAGAACTTATCATCTTTATCTGATAATGGCGAAAATCATGAGAAACCATATACAT 85
Query 128 TTGAGGGTAATAGGCAAATTGTTAATGATATTTGCAATGTTTTGGAGACTGGTGCTTGGG 187
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 86 TTGAGGGTAATAGGCAAACTGTTAATGATATTTGCAATGTTTTGGAGACTGGTCCATGGG 145
Query 188 GATCTTCAGCTGAGAATGCCCTATCTGCTCT-ATTCTTTAAACCACAACCAGAATTTGTC 246
|| |||||||||||||| | ||||||||||| | | ||||||||||||||||||||||||
Sbjct 146 GACCTTCAGCTGAGAATACTCTATCTGCTCTAAGT-TTTAAACCACAACCAGAATTTGTC 204
Query 247 ATTGGGGTTTTAAGGAGGCTGAAAGATGTTAATCGTGCGATTGAGTATTTCCGTTGGTAT 306
|||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 205 ATTGGGGTTTTACGGAGGCTGAAAGATGTTAATCGGGCTATTGAGTATTTCCGTTGGTAT 264
Query 307 GAGAGAAGAACCGAGCTGCCTCATTGTCCCGAATCATACAACTCCTTGCTTTTAGTGATG 366
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 265 GAGAGAAGAACCGAGCTGCCTCATTGTCCTGAATCATACAACTCCTTGCTTTTGGTGATG 324
Query 367 GCTCGTTGTAGGAATTTTGATGCTTTGGACCAGATTCTTGGAGAAATGAGTGTTGCAGGA 426
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GCTCGTTGTAGAAATTTTGATGCTTTGGACCAGATTCTTGGAGAAATGAGTGTTGCAGGA 384
Query 427 TTTGGCCCTTCTGTTAACACTTGTATTGAGATGGTTTTGAGCTGCGTTAAGGCTAATAAG 486
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 385 TTTGGCCCTTCTGTTAACACTTGTATTGAGATGGTTTTGGGCTGCGTTAAGGCTAATAAG 444
Query 487 CTTAGGGAAGGTTTTGATGTTGTGCAGAAT-ATGAGGAAGTTCAAGTTCCGACCTGCTTT 545
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 445 CTTAGGGAAGGTTATGATGTTGTGCAG-ATGATGAGGAAGTTCAAGTTCCGACCTGCTTT 503
Query 546 TTCAGCTTACACAACTCTTATCGGTGCTTTCTCAGCAGTTAATCATTCTGATATGATGTT 605
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 504 TTCAGCTTACACAACTCTTATCGGTGCTTTCTCGGCAGTTAATCATTCTGATATGATGTT 563
Query 606 GGCACTCTTTCAGCAAATGCAGGAGTTAGGATATGAGCCAACCGTTCATCTTTTTACAAC 665
| |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 564 GACACTCTTTCAGCAAATGCAGGAGTTAGGATATGAACCGACCGTTCATCTGTTTACAAC 623
Query 666 ATTGATTCGGGGCTTTGCCAAAGAGGGTCGAGTTGATTCTGCTCTATCTTTGCTTGATGA 725
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 624 ATTGATTCGGGGATTTGCCAAAGAGGGTCGAGTTGATTCTGCTCTATCTTTACTTGATGA 683
Query 726 GATGAAGAGCAGCTCTCTTGATGCCGACATTGTTCTTTACAATGTATGTATAGATAGCTT 785
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 684 GATGAAGAGCAGCTCTCTTGATGCCGACATTGTTCTTTATAATGTATGTATTGATAGCTT 743
Query 786 TGGTAAAGTGGGCAAGGTTGATATGGCATGGAAATTTTTTCATGAGATTGAAGCGAATGG 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TGGTAAAGTGGGCAAGGTTGATATGGCATGGAAATTTTTTCATGAGATTGAAGCGAATGG 803
Query 846 TTTAAAGCCTGATGAAGTCACTTATACCAGCATGATAGGAGTTCTGTGCAAGGCAAATAG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 804 TTTAAAGCCTGATGAAGTCACTTATACCAGCATGATAGGAGTTCTGTGCAAGGCAAACAG 863
Query 906 ATTGGATGAAGCTGTAGAGATGTTTGAGCATTTAGAGAAGAATAGACGGGTCCCTTGCAC 965
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 864 ATTGGATGAAGCTGTAGAGATGTTTGAGCATCTAGAGAAGAATAGACGGGTTCCTTGCAC 923
Query 966 TTATGCTTACAACACGATGATTATGGGTTATGGTTCGGCTGGAAAATTTGATGAAGCATA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TTATGCTTACAACACGATGATTATGGGTTATGGTTCGGCTGGAAAATTTGATGAAGCATA 983
Query 1026 CAGTCTCCTAGAGAGACAAAGGGCAAAAGGGTCTATACCGAGTGTGATTGCATATAATTG 1085
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 984 CAGTCTCCTAGAGAGACAGAGGGCTAAAGGGTCTATACCGAGTGTGATTGCATATAATTG 1043
Query 1086 CATTCTTACATGCTTAAGGAAAATGGGAAAAGTGGATGAAGCTTTGA 1132
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1044 CATTCTTACATGCTTAAGGAAAATGGGAAAAGTGGACGAAGCTTTGA 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5