BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359372
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57190.1 | Symbols: PSD2 | phosphatidylserine decarboxylase ... 1459 0.0
AT4G25970.1 | Symbols: PSD3 | phosphatidylserine decarboxylase ... 942 0.0
> AT5G57190.1 | Symbols: PSD2 | phosphatidylserine decarboxylase
2 | chr5:23171531-23175364 REVERSE LENGTH=1908
Length=1908
Score = 1459 bits (790), Expect = 0.0
Identities = 894/943 (95%), Gaps = 12/943 (1%)
Strand=Plus/Plus
Query 556 GTGGTAATTGACCGGAAGAGTAAGAGACTCGTGGAAGAGTTGATAGACTCAAAGATTGTT 615
||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||
Sbjct 973 GTGGTAATTGACCGGAAGAGTAAAAGACTTGTGGAAGAGTTGATTGATTCAAAGATTGTT 1032
Query 616 CTCTCCATGAGAGCTATTTATCAGTCAAAAATTGGACTTCGACTTATGGATCAAGGGGCA 675
|| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1033 CTGTCCATGAGAGCTATTTACCAGTCAAAAATTGGACTAAGACTTATGGATCAAGGGGCA 1092
Query 676 AAGGAGATTCTGCAGAGACTTTCTGAGAAGCAGGGGAAGAAAATGAGCTCTGTTGAATCC 735
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1093 AAGGAGATTCTGCAGAGACTTTCTGAGAAGCAGGGGAAGAAAATGAGCTCAGTTGAATCC 1152
Query 736 GCACAAAAAATACCACGCTTTCTCGAGTTCTTTAAGGCATGGAAAGATCAAATAAACATG 795
||||||||||||||||||||||||||||||||| | | | |||||||||||||||
Sbjct 1153 GCACAAAAAATACCACGCTTTCTCGAGTTCTTT-A---A--G---GATCAAATAAACATG 1203
Query 796 GCTGAAGTCAAGTATCCTCTGCAGCATTTTAAGACGTTCAATGAGTTCTTCATCCGGGAG 855
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1204 GCTGAAGTCAAGTATCCTCTGCAGCATTTTAAGACGTTCAATGAGTTCTTTATCCGAGAG 1263
Query 856 TTGAAACCTGGTGCAAGACCAATTGCTTGCATGAAAGGCGATGATGTTGCCGTATGTGCT 915
||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct 1264 TTGAAACCTGGTGCAAGACCAATTGCTTGCATGAACCGCAATGATGTTGCTGTATGTGCC 1323
Query 916 GCTGATTGTCGATTAATGGCATTTCAGTCGGTGGAGGATAGTACCCGTTTCTGGATCAAG 975
||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 1324 GCTGATTGTCGATTAATGGCATTTCAGTCGGTGGAAGATAGTACCAGATTCTGGATCAAG 1383
Query 976 GGCAAAAAGTTTTCAATAAGAGGCCTTCTTGGGAAGAGTACTGTGAATACAAATGCCTTC 1035
|||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||
Sbjct 1384 GGCAAAAAGTTTTCAATAAGAGGCCTCCTTGGGAAGA--A-TGTGAATCCAAATGCCTTC 1440
Query 1036 CTTGATGGATCTTTGGTGATATTCCGACTAGCACCACAGGATTATCATCGGTTTCATGTC 1095
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1441 CTTGATGGATCTTTGGTTATATTCAGACTAGCACCACAGGATTATCATCGGTTTCATGTC 1500
Query 1096 CCTGTCTCTGGAGTCATTGAAAAGTTTGTGGATCTTTCTGGAAGCTTATATACAGTTAAT 1155
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1501 CCTGTCTCTGGAGTCATTGAACAGTTTGTGGATGTTTCTGGAAGCTTATATACAGTTAAT 1560
Query 1156 CCGATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCA 1215
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CCAATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCA 1620
Query 1216 ATTATATCAACAGCAGAATTTGGAAAGGTTGCTTTTGTTGCAATCGGTGCGACAATGGTT 1275
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1621 ATTATATCAACAGCAGAATTTGGAAAGGTTGCTTTTGTTGCAATCGGTGCAACAATGGTT 1680
Query 1276 GGTAGCATAAATTTTGAGAGAAAGGAAGGAGAACATGTGAAGAAAGGGGATGAACTTGGT 1335
|||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1681 GGTAGCATAAATTTTGTTAGAAAGGAAGGAGAGCATGTGAAGAAAGGAGATGAACTTGGT 1740
Query 1336 TATTTTTCATTTGGTGGAAGCACAGTTATATGTGTCTTTGAAAAGGACTCGATCCGGATC 1395
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1741 TATTTTTCGTTTGGTGGAAGCACAGTTATATGTGTCTTTGAAAAGGACGCGATCGGGATC 1800
Query 1396 GATGAGGATCTCTTGGTTAACAGTGGTAGGTCCTTAGAGACATTAGTGAGTGTTGGAATG 1455
||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1801 GATAATGATCTCTTGGTTAACAGTGGTAGGTCTTTAGAGACATTAGTGAGTGTTGGAATG 1860
Query 1456 CAATTAGGTGTCTCCACAAGGACATTTGCTAGGTCTACATTGA 1498
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 CAATTAGGTGTCTCCACAAGGACATTTGCTAGGTCTACATTGA 1903
Score = 889 bits (481), Expect = 0.0
Identities = 533/559 (95%), Gaps = 0/559 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAACGGAAACTCAAGGGAGGCTAAAGAATCGAGACGGTCAAAGCTACGACAGAAG 60
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 1 ATGGGAAACGGAAACTCAAGGGAGGCTAAGGAATCGAGACGGTCAAGGCTACGACATAAG 60
Query 61 CTACAAAAGTTTCGCATTCACCGTCGTCATCTTCGTTGTTCTCGAAACTCAGCAGGAATG 120
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 61 CTACAAAAGTTTCGCATTCACCGTCGTCATCTTCGTAGTTCTCGAAACTCGGCAGGAATG 120
Query 121 GTGATACAACGAGCTGTGTCCGCCGAGGATTTCTCCGGCATTGCGCTTCTCACTCTCATT 180
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGATACAACGAACTGTTTCCGCCGAGGATTTCTCCGGCATTGCGCTTCTCACTCTCATT 180
Query 181 GGCGCGGATATGAAGTTTAAGGACAAGTGGCTCGCCTGTGTTTCTTTCGGTGAACAGACT 240
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGCGCGGAAATGAAGTTTAAGGACAAGTGGCTCGCTTGTGTTTCTTTCGGTGAACAGACT 240
Query 241 TTTAGAACTGAAATCTCAGATACTACAGAGAAGCCAATTTGGAACTCGGAGAAGAAGCTT 300
|| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 241 TTCAGAACTGAAATCTCAGATACTACACAGAAGCCAATTTGGAACTCAGAGAAGAAGCTT 300
Query 301 TTGTTGGAGAAAAATGGACCAAGTCTTGCTAGGGTCTCTGTATTTGAGACAAATAGGCTC 360
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 301 TTGTTGGAGAAAAATGGACCAAGTCTTGCTAGGGTCTCAGTATTTGAGACCAATAGGGTA 360
Query 361 TCAAGGAACAAAATCATCGGTTATTGTGAGCTTGATATATTCGATTTTGCAGTGCAGGAA 420
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 GCGAGGAACAAAATCATCGGTTATTGTGAGCTTGATATATTCGATTTTGTAGTGCAGGAA 420
Query 421 CCTGAGTCGGCATGTAAGTCATTTGACTTGTTAGATCCCACAGCATCCAATGTTGTTGGC 480
||||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 421 CCTGAGTCGACTTGTAAGTCATTTAACTTGTTAGATCCCACATCATCCAATGTTGTTGGC 480
Query 481 ACCATTTTCCTTTCTTGCGCTATTGAGGATCCTGTTGAAACCGAGCGGCGGTTTGCAAAG 540
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 481 TCCATTTTCCTTTCTTGCGCTATTGAGGATCCTGTTGAAACTGAGAGGCGGTTTGCAAAG 540
Query 541 CGTATCTTGTCCATAGTGG 559
|||||||||||||||||||
Sbjct 541 CGTATCTTGTCCATAGTGG 559
> AT4G25970.1 | Symbols: PSD3 | phosphatidylserine decarboxylase
3 | chr4:13184114-13189435 FORWARD LENGTH=2330
Length=2330
Score = 942 bits (510), Expect = 0.0
Identities = 793/926 (86%), Gaps = 34/926 (4%)
Strand=Plus/Plus
Query 556 GTGGTAATTGACCGGAAGAGTAAGAGACTCGTGGAAGAGTTGATAGACTCAAAGATTGTT 615
||||| ||||| |||||| |||||| ||||||||||||||||| || ||||||||||||
Sbjct 1096 GTGGTGATTGATAGGAAGACTAAGAGGCTCGTGGAAGAGTTGATTGATTCAAAGATTGTT 1155
Query 616 CTCTCCATGAGAGCTATTTATCAGTCAAAAATTGGACTTCGACTTATGGATCAAGGGGCA 675
| || |||||||||||||| ||||||||||| ||||| || |||||||| ||||| |||
Sbjct 1156 ATGTCTATGAGAGCTATTTACCAGTCAAAAATAGGACTCCGGCTTATGGACCAAGGAGCA 1215
Query 676 AAGGAGATTCTGCAGAGA-CTTTCTGAGAAGCAGGGGAAGAAAATGAGCTCTGTTGAATC 734
|| |||||| |||||| | ||||||||||| |||||||| ||||||| ||| ||||||||
Sbjct 1216 AAAGAGATTTTGCAGA-ACCTTTCTGAGAAACAGGGGAAAAAAATGAACTCAGTTGAATC 1274
Query 735 CGCACAAAA-AATACCACGCTTTCTCGAGTTCTTTAAGGCATGGAAAGATCAAATAAACA 793
|| ||||| | | ||| ||||||||||||| ||| | || |||||||||||||
Sbjct 1275 TGCCCAAAATATTCCCA-GCTTTCTCGAGTT-TTT----C----AAGGATCAAATAAACA 1324
Query 794 TGGCTGAAGTCAAGTATCCTCTGCAGCATTTTAAGACGTTCAATGAGTTCTTCATCCGGG 853
|||| |||||||||||||||||| | |||||||||||||||||||| |||||| | ||||
Sbjct 1325 TGGCCGAAGTCAAGTATCCTCTGGACCATTTTAAGACGTTCAATGAATTCTTCGTACGGG 1384
Query 854 AGTTGAAA-CCTGGTGCAAGACCAATTGCTTGCAT-GA-AAGGCGATGATGTTGCCGTAT 910
|||| ||| |||||||||||||||||||| ||||| || | | ||||||||||| ||||
Sbjct 1385 AGTT-AAAGCCTGGTGCAAGACCAATTGCGTGCATGGATCA-G-GATGATGTTGCTGTAT 1441
Query 911 GTGCTGCTGATTGTCGATTAATGGCATTTCAGTCGGTGGAGGATAGTACCCGTTTCTGGA 970
|||||||||||||||||||||||||||||| ||||| || ||||| || || |||||||
Sbjct 1442 CTGCTGCTGATTGTCGATTAATGGCATTTCAATCGGTTGATGATAGCACACGGTTCTGGA 1501
Query 971 TCAAGGGCAAAAAGTTTTCAAT-AAGAGGCCTTCTTGGGAAGAGT-ACTGTG-AATACAA 1027
|||||||| ||||||||||| || |||||| ||| |||| | | | |||| | | |
Sbjct 1502 TCAAGGGCCGTAAGTTTTCAATCAA-AGGCCTCCTT-GGAA-A-TGA-TGTGCAGT-CGG 1555
Query 1028 ATGCCTTCCTTGATGGATCTTTGGTGATATTCCGACTAGCACCACAGGATTATCATCGGT 1087
|||| |||||||||||||||||||||||||||||| | || |||||||| |||||||| |
Sbjct 1556 ATGCTTTCCTTGATGGATCTTTGGTGATATTCCGATTGGCGCCACAGGACTATCATCGTT 1615
Query 1088 TTCATGTC-CCTGTCTCTGGAGTCATTGAAAAGTTTGTGGATCTTTCTGGAAGCTTATAT 1146
||||| || ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1616 TTCAT-TCTCCTGTCTCTGGTGTCATTGAAAAGTTTGTCAATGTTTCTGGAAGCTTATAT 1674
Query 1147 ACAGTTAATCCGATTGCGGTCAATAGCAAGTACTGTAATGTATTCACGGAAAATAAACGA 1206
|| |||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1675 ACGGTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAATAAACGG 1734
Query 1207 ACCGTTGCAATTATATCAACAGCAGAATTTGGAAAGGTTGCTTTTGTTGCAATCGGTGCG 1266
||| | | |||||||||||||||||| ||||||||||| || |||||||| || || ||
Sbjct 1735 ACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGGTCGCATTTGTTGCGATTGGAGCA 1794
Query 1267 ACAATGGTTGGTAGCATAAATTTTGAGAGA-AAGGAAGGAGAACATGTGAAGAAAGGGGA 1325
|||||||||||||| || | |||| || ||| | ||||| |||||||||||||||||
Sbjct 1795 ACAATGGTTGGTAGTATCAGCTTTGTTAGGCAAG-AGGGAGACCATGTGAAGAAAGGGGA 1853
Query 1326 TGAACTTGGTTATTTTTCATTTGGTGGAAGCACAGTTATATGTGTCTTTGAAAAGGACTC 1385
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1854 CGAGCTTGGTTACTTTTCATTTGGTGGAAGCACAGTTATATGCGTCTTTGAAAAGGACTC 1913
Query 1386 GATCCGGATCGATGAGGATCTCTTGGTTAACAGTGGTAGGTCCTTAGAGACATTAGTGAG 1445
||| ||| |||||||||||||| | |||||||| ||||||||| ||||||||||| |
Sbjct 1914 GATTAAGATTGATGAGGATCTCTTAGCTAACAGTGCTAGGTCCTTGGAGACATTAGTTAC 1973
Query 1446 TGTTGGAATGCAA-TTAGGTGTCTCC 1470
||||||||||||| || |||||||||
Sbjct 1974 TGTTGGAATGCAACTT-GGTGTCTCC 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5