BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359400

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46890.1 | Symbols:  | Protein of unknown function (DUF1295)...   610    3e-174


> AT2G46890.1 | Symbols:  | Protein of unknown function (DUF1295) 
| chr2:19266733-19268170 REVERSE LENGTH=1151
Length=1151

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 358/372 (96%), Gaps = 0/372 (0%)
 Strand=Plus/Plus

Query  1     ATGGCATACTACGCAGACACACAGCTTCACGAGTTTGTAACCGGAAACCAAAAACTCAAG  60
             ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  634   ATGGCGTACTTCGCAGACACACAGCTTCACGAGTTTGTAACCGGAAACCAAAAGCTCAAG  693

Query  61    GAGCAAGGAAAGCCTAAGATCCCCAATCTCGACACGGGTTTGTGGCATTACTCAAGACAT  120
             |||||||||||||| || ||||||||||| ||| |||||||||||| |||||||||||||
Sbjct  694   GAGCAAGGAAAGCCCAAAATCCCCAATCTGGACTCGGGTTTGTGGCGTTACTCAAGACAT  753

Query  121   CCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGGTCATATTTGCTTGGAACCTT  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  754   CCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGGTCATATTTGCTTGGAACCTT  813

Query  181   GGTCAAGGATGGACTTTGATAGGTGCATTGGTCAATACTCTGTGTTTGGTCTATGTAACA  240
             |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| 
Sbjct  814   GGTCAAGGGTGGACTTTGATTGGTGCATTGGTCAATACTCTGTGTCTGGTCTATGTAACG  873

Query  241   ATTCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAGCTGAAGCTTATAGAGCATAT  300
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  874   ATCCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAGCTGAAGCTTATAGAGCATAT  933

Query  301   CAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTCATGTTGCTGCTACTAAAGAC  360
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  934   CAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTCATGCTGCTGCTACTAAAGAC  993

Query  361   AAGAACACTTGA  372
             ||||||||||||
Sbjct  994   AAGAACACTTGA  1005



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5