BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359413
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30110.1 | Symbols: ATUBA1, MOS5, UBA1 | ubiquitin-activatin... 1858 0.0
AT5G06460.1 | Symbols: ATUBA2, UBA 2 | ubiquitin activating enz... 787 0.0
> AT2G30110.1 | Symbols: ATUBA1, MOS5, UBA1 | ubiquitin-activating
enzyme 1 | chr2:12852372-12857617 REVERSE LENGTH=3626
Length=3626
Score = 1858 bits (1006), Expect = 0.0
Identities = 1057/1082 (98%), Gaps = 2/1082 (0%)
Strand=Plus/Plus
Query 385 GAAGAGGACGCTCAGAAGCTTATATCGATTGCCACAGCCATCAATACCGGGCAGGGTGAT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GAAGAGGACGCTCAGAAGCTTATATCGATTGCCACAGCCATCAATACCGGGCAGGGTGAT 1317
Query 445 TTAAAGGTGGAGAATGTTGACCAGAAGCTTCTACGACACTTTTCCTTTGGAGCCAAGGCT 504
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1318 TTAAAGGTGGAGAATGTTGATCAGAAGCTTCTAAGACACTTTTCCTTTGGAGCCAAGGCT 1377
Query 505 GTCCTGAATCCCATGGCTGCAATGTTTGGCGGTATTGTTGGACAGGAGGTTGTTAAAGCT 564
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GTCCTGAATCCTATGGCTGCAATGTTTGGCGGTATTGTTGGACAGGAGGTTGTTAAAGCT 1437
Query 565 TGCTCTGGAAAATTTCATCCTCTCTTCCAGTTTTTCTACTTTGATTCAGTGGAGTCACTA 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGCTCTGGAAAATTTCATCCTCTCTTCCAGTTTTTCTACTTTGATTCAGTGGAGTCACTC 1497
Query 625 CCCACTGAACCTCTGGACTCGAGTGACTTTGCACCAAGAAACAGCCGGTATGATGCCCAA 684
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CCCTCTGAACCTGTGGACTCGAGTGACTTTGCACCAAGAAACAGCCGGTATGATGCCCAA 1557
Query 685 ATATCTGTATTTGGGGCCAAGTTCCAGAAGAAACTTGAAGATGCTAAAGTTTTCACAGTA 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ATATCTGTATTTGGGGCCAAGTTCCAGAAGAAACTTGAAGATGCTAAAGTTTTCACAGTA 1617
Query 745 GGGTCTGGTGCTCTTGGCTGTGAGTTCTTGAAAAATATGGCTCTGATGGGGGTTTCTTGT 804
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1618 GGGTCTGGTGCTCTTGGCTGTGAGTTCTTGAAAAATTTGGCTCTGATGGGGGTTTCTTGT 1677
Query 805 GGAAGCCAAGGGAAGCTGACAGTGACAGATGATGATATAATTGAGAAGAGTAACCTCAGT 864
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1678 GGAAGCCAAGGGAAGCTGACAGTGACAGATGATGATATCATTGAGAAGAGTAACCTCAGT 1737
Query 865 CGTCAATTTCTGTTCCGTGACTGGAACATCGGACAGGCTAAATCCACAGTTGCTGCTTCG 924
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1738 CGTCAATTTCTGTTCCGTGACTGGAACATTGGACAGGCTAAATCCACAGTTGCTGCTTCG 1797
Query 925 GCTGCTGCTGCTATAAATCCCCGCTTCAACATTGAGGCCCTGCAAAACCGTGTTGGCGCT 984
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GCTGCTGCTGTTATAAATCCTCGCTTCAACATTGAGGCCCTGCAAAACCGTGTTGGCGCG 1857
Query 985 GAGACTGAGAATGTATTTGATGATGCCTTCTGGGAGAACTTAACTGTTGTCGTCAATGCA 1044
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GAGACTGAGAATGTATTTGACGATGCCTTCTGGGAGAACTTAACTGTTGTCGTCAATGCA 1917
Query 1045 CTGGATAATGTCAATGCGAGGCTCTATGTTGATTCGAGGTGCTTGTATTTCCAGAAGCCT 1104
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 CTGGATAATGTTAATGCGAGGCTCTATGTTGATTCGAGGTGCTTGTATTTCCAGAAGCCT 1977
Query 1105 CTCCTTGAGTCTGGAACTCTTGGTGCAAAGTGCAACACACAGAT-GGTTATCCCACATCT 1163
|||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 1978 CTCCTTGAGTCTGGAACTCTTGGTACAAAGTGCAACACACAG-TCGGTTATCCCACATCT 2036
Query 1164 AACTGAAAATTACGGTGCCTCAAGGGACCCACCAGAGAAACAAGCCCCCATGTGTACAGT 1223
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2037 AACTGAAAATTACGGTGCCTCAAGGGACCCACCAGAGAAACAGGCCCCCATGTGTACAGT 2096
Query 1224 GCATTCGTTTCCGCATAACATTGATCACTGTTTAACTTGGGCTCGCTCTGAGTTTGAGGG 1283
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 GCATTCCTTCCCGCATAACATTGATCACTGTTTAACTTGGGCTCGCTCTGAGTTTGAGGG 2156
Query 1284 TCTGCTGGAGAAGACTCCCGCTGAAGTGAACGCATATCTCTCTAGCCCAGTTGAGTACAC 1343
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2157 TCTGCTGGAGAAGACTCCCGCTGAAGTGAATGCATATCTTTCTAGCCCAGTTGAGTACAC 2216
Query 1344 TAACTCAATGATGAGTGCTGGTGATGCTCAGGCGAGGGACACATTGGAGAGGATTGTTGA 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 TAACTCAATGATGAGTGCTGGTGATGCTCAGGCGAGGGACACATTGGAGAGGATTGTTGA 2276
Query 1404 GTGCCTTGACAAGGAGAAGTGTGAGACCTTCCAAGACTGCTTAACCTGGGCTCGATTGAG 1463
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2277 GTGCCTTGAAAAGGAGAAGTGTGAGACCTTCCAAGACTGCTTAACCTGGGCACGACTGAG 2336
Query 1464 GT 1465
||
Sbjct 2337 GT 2338
Score = 507 bits (274), Expect = 2e-142
Identities = 336/363 (93%), Gaps = 16/363 (4%)
Strand=Plus/Plus
Query 25 AGGTTTTTTCATCACTTTATGCTTCACAAGCGAGCTAGTGAAGCTAACGATAAGAACGAT 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AGGTTTTTTCATCACTTTATGCTTCACAAGCGAGCTAGTGAAGCTAACGATAAGAACGAT 165
Query 85 AATAGCATCATCGGTTCCGATTTAGCATCATCTAAGAAACGCCGTATCGATATCACTGAT 144
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 166 AATACCATCATCGGTTCCGATTTAGCATCATCTAAGAAACGCCGTATCGATTTCACTGA- 224
Query 145 TCTTCTTCGTCTGATAA-TAAGTCTTCGATTGTT-GCTTCTGgtagtagtagtagtagta 202
|||||||||||||| | ||||||||| || ||||| | | ||||||| ||
Sbjct 225 --ATCTTCGTCTGATAAGT-CTTCTTCGATT-TTAGCTTC---T-G--GTAGTAGCAG-- 272
Query 203 gCGGATTTCACGGCGATAGCGTCGCTCACCAAATCGACATGGCTTTTGGTAATTCGAACC 262
| || ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 273 G-GGTTTTCACGGCGATAGCGTCGTTCAGCAAATCGACATGGCTTTTGGTAATTCGAACC 331
Query 263 GTCAGGAGATTGATGAAGATCTGCATAGTCGGCAGCTCGCCGTCTATGGTCGTGAGACTA 322
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 332 GTCAGGAGATTGATGAAGATCTGCACAGTCGCCAGCTCGCCGTCTATGGTCGTGAGACTA 391
Query 323 TGAGGCGTCTCTTTGCTTCCAATGTTCTCATCTCGGGGATGCACGGTCTTGGTGCCGAGA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TGAGGCGTCTCTTTGCTTCCAATGTTCTCATCTCGGGGATGCACGGTCTTGGTGCCGAGA 451
Query 383 TTG 385
|||
Sbjct 452 TTG 454
> AT5G06460.1 | Symbols: ATUBA2, UBA 2 | ubiquitin activating enzyme
2 | chr5:1970029-1974527 FORWARD LENGTH=3438
Length=3438
Score = 787 bits (426), Expect = 0.0
Identities = 812/996 (82%), Gaps = 36/996 (4%)
Strand=Plus/Plus
Query 488 CCTTTGGAGCCAAGGCTGTCCTGAATCCCATGGCTGCAATGTTTGGCGGTATTGTTGGAC 547
|||||||| ||| |||||| |||||||| ||||||||||||||||| || |||||||| |
Sbjct 1288 CCTTTGGATCCAGGGCTGTTCTGAATCCTATGGCTGCAATGTTTGGTGGCATTGTTGGGC 1347
Query 548 AGGAGGTTGTTAAAGCTTGCTCTGGAAAATTTCATCCTCTCTTCCAGTT-TTTCTACTTT 606
|||||||||| || || |||||||| ||||| |||||| |||| ||||| ||| ||||||
Sbjct 1348 AGGAGGTTGTCAAGGCATGCTCTGGGAAATTCCATCCTATCTTTCAGTTCTTT-TACTTT 1406
Query 607 GATTCAGTGGAGTCACTACCCACTGAACCTCTGGACTCG-AGT--GACTTT-GCACCA-A 661
||||| ||||||||||| |||| |||||||| || | | | | || ||| | |||| |
Sbjct 1407 GATTCGGTGGAGTCACTCCCCAAGGAACCTCTTGA-T-GCA-TCAGAGTTTAG-ACCACA 1462
Query 662 GAAACAGCCGGTATGATGCCCAAATATCTGTATTTGGGGCCAAGT-TCCAGAAGAAACTT 720
||| ||||| || ||||| || || ||||||||| ||| | | | | |||||||||||
Sbjct 1463 -AAATAGCCGTTACGATGCACAGATCTCTGTATTT-GGGTCTACTCTTCAGAAGAAACTC 1520
Query 721 GAAGATGCTAAAGTTTTCACAGTAGGGTCTGGTGCTCTTGGCTGTGAGTTCTTGAAA-AA 779
|| ||||| | |||||| |||||| ||||||||||||| || |||||||| ||| ||
Sbjct 1521 GAGGATGCCAGAGTTTTTGTTGTAGGGGCTGGTGCTCTTGGATGCGAGTTCTT-AAAGAA 1579
Query 780 -TATGGCTCTGATGGGGGTTTCTTGTGGAAGCCAAGGGAAGCTGACAGTGACAGATGATG 838
| ||||| ||||||| || || ||||| | |||||||||||| || || || |||||||
Sbjct 1580 CT-TGGCTTTGATGGGTGTGTCATGTGGCACCCAAGGGAAGCTAACTGTCACCGATGATG 1638
Query 839 ATATAATTGAGAAGAGTAACCTCAGTCGTCAATTTCTGTTCCGTGACTGGAACATCGGAC 898
|| ||||||||||||| ||||| |||||||| ||||| || || || |||||||| ||||
Sbjct 1639 ATGTAATTGAGAAGAGCAACCTGAGTCGTCAGTTTCTTTTTCGAGATTGGAACATAGGAC 1698
Query 899 AGGCTAAATCCACAGTTGCTGCTTCGGCTGCTGCTGCTATAAATCCCCGCTTCAACATTG 958
||||||||||||||||||| || | || || |||| |||||| | ||| |||||||||
Sbjct 1699 AGGCTAAATCCACAGTTGCCGCAACAGCAGCAGCTGGAATAAATTCTCGCCTCAACATTG 1758
Query 959 AGGCCCTGCAAAACCGTGTTGG-CGCTGAGACTGAGAATGTATTTGATGA-TGCCTTCTG 1016
| || |||||||| |||||||| | ||||||| |||||||| ||||| || | ||||||
Sbjct 1759 ATGCTCTGCAAAATCGTGTTGGAC-CTGAGACCGAGAATGTCTTTGACGACAG-CTTCTG 1816
Query 1017 GGAGAACTTAACTGTTGTCGTCAATGCACTGGATAATGTCAATGCGAGGCTCTATGTTGA 1076
|||||| || || ||||| || || || |||| ||||||| ||| ||||| ||||||||
Sbjct 1817 GGAGAATTTGACAGTTGTGGTGAACGCTTTGGACAATGTCACTGCAAGGCTTTATGTTGA 1876
Query 1077 TTCGAGGTGCT-TGTATTTCCAGAAGCCTCTCCTTGAGTCTGGAACTCTTGGTGCAAAGT 1135
||| ||||| | |||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct 1877 TTCAAGGTG-TGTGTATTTCCAGAAGCCTCTCCTCGAGTCAGGAACCCTAGGTGCAAAGT 1935
Query 1136 GCAACACACAGATGGTTATCCCACATCTAACTGAAAATTACGGTGCCTCAAGGGACCCAC 1195
|||||||||||||||||||||| || || ||||| || || |||||||| || |||||||
Sbjct 1936 GCAACACACAGATGGTTATCCCTCACCTCACTGAGAACTATGGTGCCTCGAGAGACCCAC 1995
Query 1196 CAGAGAAACAAGCCCCCATGTGTACAGTGCATTCGTTTCCGCATAACATTGATCACTGTT 1255
|||||||||| || || ||||| || ||||| || ||||| || ||||||||||| || |
Sbjct 1996 CAGAGAAACAGGCTCCAATGTGCACCGTGCACTCATTTCCTCACAACATTGATCATTGCT 2055
Query 1256 TAACTTGGGCTCGCTCTGAGTTTGAGGGTCTGCTGGAGAAGACTCCCGCTGAAGTGAACG 1315
|||| |||||||||||||| ||||||||| |||| ||||| || || |||||||| || |
Sbjct 2056 TAACATGGGCTCGCTCTGAATTTGAGGGTTTGCTTGAGAAAACACCAGCTGAAGTTAATG 2115
Query 1316 CATATCTCTCTAGC-CCAGTTGAGTACACT-AACTCAATGATGAG-TGCTGGTGATGCTC 1372
|||| ||||| || || ||||| |||| | || | |||| || |||||||||||| |
Sbjct 2116 CATACCTCTC-AGATCCTGTTGAATACA-TGAAAGCGATGA-GAACTGCTGGTGATGCCC 2172
Query 1373 AGGCGAGGGACACATTGGAGA-G-GATTGTTGAGTGCCTTGACAAGGAGAAGTGTGAGAC 1430
| || ||||| || |||| || | | ||||||||||||| || || || ||||| | |
Sbjct 2173 AAGCAAGGGATACTTTGG-GACGTG-TTGTTGAGTGCCTCGAGAAAGAAAAGTGCAATTC 2230
Query 1431 CTTCCAAGACTGCTTAACCTGGGCTCGAT-TGAGGT 1465
||||| || ||| ||||||||||||| | ||||||
Sbjct 2231 ATTCCAGGATTGCATAACCTGGGCTCG-TCTGAGGT 2265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5