BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359426

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54560.1 | Symbols: XIE, ATXIE | Myosin family protein with ...   828    0.0  


> AT1G54560.1 | Symbols: XIE, ATXIE | Myosin family protein with 
Dil domain | chr1:20371649-20379745 REVERSE LENGTH=4590
Length=4590

 Score =  828 bits (448),  Expect = 0.0
 Identities = 485/503 (96%), Gaps = 2/503 (0%)
 Strand=Plus/Plus

Query  1     TCTTTTGTTAAGACGGGAGTGTTGTTCATTTAGCAATGGAGAATACGTAAAAGCAGGATT  60
             |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  4089  TCTTCTGTTAAGACGGGAGTGCTGTTCATTTAGCAATGGGGAATACGTAAAAGCAGGATT  4148

Query  61    GGCTGAATTGGAGCACTGGTGTTACAATGCAACAGATGAATATGCAGGTTCTTCTTGGGA  120
              |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  4149  AGCTGAACTGGAGCACTGGTGTTACAATGCAACAGATGAATATGCGGGTTCTTCTTGGGA  4208

Query  121   TGAGCTGAAGCATATCAGACAGGCCATCGGGTTTCTGGTCATACACCAAAAACCTaaaaa  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4209  TGAGCTGAAGCATATCAGACAGGCCATCGGGTTTCTGGTCATACACCAAAAACCTAAAAA  4268

Query  181   aaCCTTGGACGAGATAAGTCATGAGCTGTGTCCGGTGCTCAGCATTCAACAACTATACCG  240
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  4269  AACCTTGGACGAGATAAGTCATGAGCTGTGTCCGGTGCTCAGCATACAACAACTATACCG  4328

Query  241   AATAAGTACGATGTATTGGGACGACAAGTACGGAACTCACAGTGTATCACCAGACGTGAT  300
             |||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct  4329  AATAAGTACGATGTATTGGGACGACAAGTATGGAACTCATAGCGTATCACCAGACGTGAT  4388

Query  301   AGCAAATATGAGAGTACTAATGACAGAAGATTCAAACAATGCTGTTAGCAACTCTTTTCT  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4389  AGCAAATATGAGAGTACTAATGACAGAAGATTCAAACAATGCTGTTAGCAACTCTTTTCT  4448

Query  361   -CTTGGATGACGATTCTAGCATTCCTTTCTCGGTTGATGATCTGTCGAAATCGATGGAGC  419
              || |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct  4449  ACT-GGATGACGATTCGAGTATTCCTTTCTCGGTTGATGATTTGTCGAAATCGATGGAGC  4507

Query  420   GGATAGAGATTGGAGATGTAGAACCACCGCCTCTCATCCGAGAGAATTCTGGTTTTAGCT  479
             |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  4508  GGATAGAGATCGGAGATGTAGAACCACCACCTCTTATCCGAGAGAATTCTGGTTTTAGCT  4567

Query  480   TTCTATTGCCATGTTCTGACTAA  502
             |||||||||||||||||||||||
Sbjct  4568  TTCTATTGCCATGTTCTGACTAA  4590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23961688119


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5