BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359442

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55860.1 | Symbols:  | Plant protein of unknown function (DU...   440    4e-123


> AT5G55860.1 | Symbols:  | Plant protein of unknown function (DUF827) 
| chr5:22609532-22612393 FORWARD LENGTH=2469
Length=2469

 Score =  440 bits (238),  Expect = 4e-123
 Identities = 262/274 (96%), Gaps = 0/274 (0%)
 Strand=Plus/Plus

Query  1     ATGGCCGATGCTGCTAAGAAAGCTGTTGAAGGAGAACTCAGGAGATGGCGCGAAAGAGAT  60
             ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  1931  ATGGCTGATGCTGCCAAGAAAGCGGTTGAAGGAGAACTCAGGAGATGGCGAGAAAGAGAT  1990

Query  61    CAGAAGAAAGCAGAGGAAGCGGCGACAAGGATTCTAGCAGAAGCTGAGATGAAGATTGCC  120
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  1991  CAGAAGAAAGCAGAGGAAGCGGCGACAAGGATTCTCGCAGAAGCTGAGATGAAGATGGCC  2050

Query  121   AGTGAATCATCACCGCAAAAACATTACAAAGCTCCGAAACAGAGACCTGTCCATAACAAA  180
             |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct  2051  AGTGAATCATCACCGCAACAACATTACAAAGCTCCGAAACAGAAACCTGTCAATAACAAA  2110

Query  181   CTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTTTGCCGAATCTAAGTGGA  240
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  2111  CTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTATGCCGAATCTAAGTGGA  2170

Query  241   ATCTTCAATAGAAAGAAAAATCAAGTGGAATGGG  274
             |||||||| |||||||| ||||||||||||||||
Sbjct  2171  ATCTTCAACAGAAAGAAGAATCAAGTGGAATGGG  2204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5