BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359459
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78660.1 | Symbols: ATGGH1, GGH1 | gamma-glutamyl hydrolase ... 1044 0.0
AT1G78680.1 | Symbols: ATGGH2, GGH2 | gamma-glutamyl hydrolase ... 623 6e-178
AT1G78670.1 | Symbols: ATGGH3, GGH3 | gamma-glutamyl hydrolase ... 569 9e-162
AT1G75480.1 | Symbols: | pseudogene, hypothetical protein, sim... 163 2e-39
> AT1G78660.1 | Symbols: ATGGH1, GGH1 | gamma-glutamyl hydrolase
1 | chr1:29585811-29588302 FORWARD LENGTH=1322
Length=1322
Score = 1044 bits (565), Expect = 0.0
Identities = 610/632 (97%), Gaps = 2/632 (0%)
Strand=Plus/Plus
Query 1 AAAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTTCCAGTTTATGGCATTTGTCTCGGA 60
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 505 AAAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTCCCAGTATATGGCATTTGCCTCGGA 564
Query 61 TTCGAGCTTATGTCAATTATCATCAGTCAGAACAGAGACATTCTTGAAAGATTTGATGCA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 565 TTCGAGCTTATGTCAATTATCATAAGTCAGAACAGAGACATTCTTGAAAGATTTGATGCA 624
Query 121 GAGGATAATGCATCAACCCTACAGTTTGTTGATAATGTTAATATCGATGGAACATTATTC 180
|||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 625 GAGGATAATGCATCAAGTCTCCAGTTTGTTGATAATGTTAATAACGATGGAACATTATTC 684
Query 181 CAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCAGAAA 240
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 685 CAAAGATTTCCGCCAGAGTTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCAGAAA 744
Query 241 CACAAGTATGGTATCACACCAGCAAACTTTCAAGGCAATCCTGCTTTGTCTAGTTTCTTT 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 745 CACAAGTATGGTATCACACCAGCAAACTTTCAAGCCAATCCTGCTTTGTCTAGTTTCTTT 804
Query 301 GAAATCCTCACAACCTGCATAGATGAAAACAGCAAGACTTATGTTTCAACTGTTAAAGCA 360
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 805 GAAATTCTCACAACCTGCATTGATGAAAACAGCAAGACTTATGTTTCAACTGTTAAAGCA 864
Query 361 AAGAGATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTGAATGGGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 AAGAGATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTGAATGGGGA 924
Query 421 TCATCCGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTGCTAGTTAT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TCATCTGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTGCTAGTTAT 984
Query 481 TTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCACCA-TCAAAGAAAGTGCTAAGCAA 539
|||||||||||||||||||||||||||||||||||| | || |||||||||| |||||
Sbjct 985 TTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAG-AGTCTCAGAAAGTGCTGAGCAA 1043
Query 540 TCTCATATACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACGACGAGGT 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACGACGAGGT 1103
Query 600 TTACATTTTCACACAACCAAGATCCCGTTTCT 631
||||||||| ||||||||||||||||||||||
Sbjct 1104 TTACATTTTTACACAACCAAGATCCCGTTTCT 1135
> AT1G78680.1 | Symbols: ATGGH2, GGH2 | gamma-glutamyl hydrolase
2 | chr1:29593781-29596270 FORWARD LENGTH=1429
Length=1429
Score = 623 bits (337), Expect = 6e-178
Identities = 539/635 (85%), Gaps = 20/635 (3%)
Strand=Plus/Plus
Query 1 AAAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTTCCAGTTTAT-GGC-ATTTGTCTCG 58
|||| |||||| |||||||||||||||||||||||||| | ||| || ||||| ||||
Sbjct 564 AAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCC--TATATACGCTATTTGCCTCG 621
Query 59 GATTCGAGCT-TATGTCAATTATCATCAGTCAGAACAGAGACATTCTTGAAAGATTTGAT 117
|||| ||||| | || |||| ||||| || ||||||||||||||| |||||| | | |||
Sbjct 622 GATTTGAGCTCT-TGACAATGATCATAAGCCAGAACAGAGACATTTTTGAAAAAATGGAT 680
Query 118 GC-AGAGGATAATGCATCAACCCTACAGTTTGTTGATAATGTTAATATCGATGGAA-CAT 175
|| ||| || |||||||| || ||||| ||||| |||||||||||| | |||| ||
Sbjct 681 GCAAGA-AATTCTGCATCAAGTCTTCAGTTCGTTGAAAATGTTAATATCCAAGGAACCA- 738
Query 176 TATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGC 235
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 739 TATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGTACAGATTGTCTGGTTATGC 798
Query 236 AGAAACA-CAAGTATGGTATCACACCAGCAAA-CTTTCAAGGCAATCCTGCTTTGTCTAG 293
|||| || | || ||||||| ||||| |||| |||| |||| ||| |||| ||||||
Sbjct 799 AGAATCATCG-GTTTGGTATCTCACCA-CAAAGCTTTGAAGGAAATATTGCTCTGTCTAA 856
Query 294 TTTCTTTGAAATCCTCACAACCTGCATAGATGAAAACAGCAAGACTTATGTTTCAACTGT 353
||||||| |||| ||||||| ||| | ||||| ||| ||||| |||||||||||| ||
Sbjct 857 TTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCAAGGTTTATGTTTCAACAGT 916
Query 354 TAAAGCAA-AGAGATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTG 412
| || ||| | | ||| ||| | || |||||||||||||||||||||||||||||||| |
Sbjct 917 TCAATCAACAAA-ATATCCAGTGACCGGCTTCCAGTGGCATCCTGAGAAAAATGCATTCG 975
Query 413 AATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTG 472
| ||||||||||| ||||||||||||||||| || ||||||||||| ||||| || |
Sbjct 976 AGTGGGGATCATCTAAAATTCCACACTCTGAGGACGCGATCCAGGTGACTCAGCACGCCG 1035
Query 473 CTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCACCA-TCAAAGAAAGTG 531
| | | || ||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 1036 CAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAG-AGTCTAAGAAAGTG 1094
Query 532 CTAAGCAATCTCATATACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTAC 591
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1095 CTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGATTGGTTAC 1154
Query 592 GACGAGGTTTACATTTTCACACAACCAA-GATCCC 625
|||||||||||||| |||||||||| || ||||||
Sbjct 1155 GACGAGGTTTACATCTTCACACAAC-AACGATCCC 1188
> AT1G78670.1 | Symbols: ATGGH3, GGH3 | gamma-glutamyl hydrolase
3 | chr1:29590945-29593499 FORWARD LENGTH=1347
Length=1347
Score = 569 bits (308), Expect = 9e-162
Identities = 533/641 (83%), Gaps = 18/641 (3%)
Strand=Plus/Plus
Query 1 AAAGCTT-TGGAGAGAAATGATGCTGGAGAGCATTTTCCAGTTTATGGCATTTGTCTCGG 59
|||| || |||||| ||||||||||||||| |||||||| || || | ||| ||||| ||
Sbjct 553 AAAG-TTATGGAGAAAAATGATGCTGGAGAACATTTTCCGGTGTACGCCATGTGTCTTGG 611
Query 60 ATTCGAGCTTATGTCAATTATCATCAGTCAGAACAGAGACATTCTTGAAAGATTTGA-TG 118
||||||| || ||||||| ||||| ||||||||||||||||||||||| || ||| | |
Sbjct 612 ATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATTCTTGAGAGGTTTAACT- 670
Query 119 CAG-AGGA-TAATGCATCAACCCTACAGTTTGTTGATAATGTTAATATCGATGGAACATT 176
||| | | | ||||||||| || |||||| || | || ||||||||||| | ||| |
Sbjct 671 CAGTA-AACT-ATGCATCAAGTCTCCAGTTTTTTAAAAACGTTAATATCGAAGCAACCGT 728
Query 177 ATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCA 236
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 729 GTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAGCTCAGTGCAGACTGTTTGGTTATGCA 788
Query 237 GAAACACAAGTATGGTATCACACCAG-CAAACTTTCAAGGCAATCCTGCTTTGTCTAGTT 295
||| ||| | | ||||||| |||||| ||| |||||||||||||||| | |||||||||
Sbjct 789 GAACCACTATTTTGGTATCTCACCAGACAA-CTTTCAAGGCAATCCTTATCTGTCTAGTT 847
Query 296 TCTTTGAA-ATCCTCACAACCTGCATAGATGAAA-ACAGCAAGACTTATGTTTCAACTGT 353
|||| || ||| |||||||| || ||| ||| |||||||||||| |||||||||| |
Sbjct 848 TCTTC-AATATCGTCACAACCAGCGCCGAT-AAAGACAGCAAGACTTTTGTTTCAACTAT 905
Query 354 TAAAGCAAAGA-GATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTG 412
| | |||| | ||||||| | || | |||||| |||||||| |||||||||||||| |
Sbjct 906 TCGATCAAA-ACGATACCCTGTGACCGCCTTCCAATGGCATCCAGAGAAAAATGCATTCG 964
Query 413 AATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTG 472
||||||||||||| | || |||||||||||||| ||||| |||||||| || |||||||
Sbjct 965 AATGGGGATCATCTGAAATCCCACACTCTGAGGACGCAATTCAGGTGACTCAACATGCTG 1024
Query 473 CTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCACCATCAAAGAAAGTGC 532
| | |||| ||||||||||||| || |||||| ||||||||||| | || |||||||||
Sbjct 1025 CAAATTATCTAGTCAGTGAAGCCAGAAAGTCAATGAACAGACCATCTTCTGAGAAAGTGC 1084
Query 533 TAAGCAATCTCATATACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACG 592
| ||||||||||| |||||||| |||||||| |||| |||||| |||||| ||| |||
Sbjct 1085 TGAGCAATCTCATCTACAACTACAAGCCTACGTACTCCGGATACAAAGGGAGCGGTGACG 1144
Query 593 ACGAGGTTTACATTTTCACACAACCAAGATCCCGTT-TCTG 632
|||||||||| |||||||| ||| |||||||| || ||||
Sbjct 1145 ACGAGGTTTATATTTTCACGTAACAAAGATCCC-TTCTCTG 1184
> AT1G75480.1 | Symbols: | pseudogene, hypothetical protein, similar
to GB:AAC33745 from (Arabidopsis thaliana) | chr1:28334088-28334744
REVERSE LENGTH=657
Length=657
Score = 163 bits (88), Expect = 2e-39
Identities = 93/95 (98%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 395 CTG-AGAAAAATGCATTTGAATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATC 453
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CTGTAGAAAAATGCATTTGAATGGGGATCATCTGCGATTCCACACTCTGAGGATGCAATC 120
Query 454 CAGGTGACACAGCATGCTGCTAGTTATTTAGTCAG 488
|||||||||||||||||||||||||||||||||||
Sbjct 121 CAGGTGACACAGCATGCTGCTAGTTATTTAGTCAG 155
Score = 130 bits (70), Expect = 2e-29
Identities = 79/83 (95%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 486 CAGTGAAGCTAGGAAGTCACTGAACAGACCACCATCAAAGAAAGTGCTAAGCAATCTCAT 545
|||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 246 CAGTGAAGCTAGGACGTCACTGAACAGA-CACCATCTAAGAAAGTGCTGAGCAATCTCAT 304
Query 546 ATACAACTATAAGCCTACTTACT 568
|||||||||||||||||||||||
Sbjct 305 ATACAACTATAAGCCTACTTACT 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5