BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359466

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits t...   363    8e-100
  AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper ...  97.1    9e-20 


> AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits 
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa 
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes 
- 62 (source: NCBI BLink). | chr5:24473319-24474491 
REVERSE LENGTH=815
Length=815

 Score =  363 bits (196),  Expect = 8e-100
 Identities = 256/282 (91%), Gaps = 15/282 (5%)
 Strand=Plus/Plus

Query  1    TGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGC  60
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  364  TGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGC  423

Query  61   CTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCg  120
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct  424  CTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTG  483

Query  121  ---aagaagaagaag-atga-a-gtagaagaaatggaagaagtagaagaggttgaagaag  174
               |||||||||||| | || | ||||||||||||||||| |||||||||||||||||||
Sbjct  484  TTGAAGAAGAAGAAGTAGGAGAAGTAGAAGAAATGGAAGAGGTAGAAGAGGTTGAAGAAG  543

Query  175  aagttgaagaagtaggagaagtagaagaagtagaagaagaacaagaagaGGTCATTGATT  234
            ||||  | ||  | | | | |||| |||||||||||||||||||||||||||||| ||||
Sbjct  544  AAGT--A-GA--T-G-A-A-GTAGGAGAAGTAGAAGAAGAACAAGAAGAGGTCATAGATT  594

Query  235  CAGCTTCTGCAGAGATACCCAATGGTGAAATCCCCAGTGGAG  276
            ||||||||||||||||||| |||||||||||| ||| |||||
Sbjct  595  CAGCTTCTGCAGAGATACCAAATGGTGAAATCTCCAATGGAG  636


> AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper 
70 | chr5:24472639-24473319 FORWARD LENGTH=621
Length=621

 Score = 97.1 bits (52),  Expect = 9e-20
 Identities = 56/58 (97%), Gaps = 0/58 (0%)
 Strand=Plus/Minus

Query  275  AGCTCTTCGATCTGCTTCTTTTTGCGCATACGTGACCTTCTTGCATATTCCCGGTTAG  332
            |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct  290  AGCTCTTCGATCTGCTTCTTTTTGCGCATACGTGACCTCCTTGCAGATTCCCGGTTAG  233



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15482466692


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5