BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359470

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits t...   806    0.0  


> AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits 
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa 
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes 
- 62 (source: NCBI BLink). | chr5:24473319-24474491 
REVERSE LENGTH=815
Length=815

 Score =  806 bits (436),  Expect = 0.0
 Identities = 563/622 (91%), Gaps = 18/622 (3%)
 Strand=Plus/Plus

Query  9    CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA  68
            |||| || |||||||||||||||||| ||||||||||||||||||  |||| || || ||
Sbjct  80   CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA  139

Query  69   GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT  125
            ||  |||| || | |||||||| ||||| |||||||||||||||||  | ||||| ||||
Sbjct  140  GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT  199

Query  126  TACGATGATGGATATTGTGAATAGCAATGGAATTTTAACAGATCAATTGGTTGACGAAGA  185
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  200  TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA  259

Query  186  ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA  245
             |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  260  CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA  319

Query  246  AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA  305
            |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  320  AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA  379

Query  306  GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCATGTGCACGTTGGTA  365
            ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct  380  GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA  439

Query  366  TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCg---aagaagaagaag-  421
            |||||||||||||||||||||| ||||||||||||||||||| |   |||||||||||| 
Sbjct  440  TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTGAAGAAGAAGAAGT  499

Query  422  atga-a-gtagaagaaatggaagaagtagaagaggttgaagaagaagttgaagaagtagg  479
            | || | ||||||||||||||||| |||||||||||||||||||||||  | ||  | | 
Sbjct  500  AGGAGAAGTAGAAGAAATGGAAGAGGTAGAAGAGGTTGAAGAAGAAGT--A-GA--T-G-  552

Query  480  agaagtagaagaagtagaagaagaacaagaagaGGTCATTGATTCAGCTTCTGCAGAGAT  539
            | | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  553  A-A-GTAGGAGAAGTAGAAGAAGAACAAGAAGAGGTCATAGATTCAGCTTCTGCAGAGAT  610

Query  540  ACCCAATGGTGAAATCCCCAGTGGAGGTACTGTCTTAGAGGACACTTGTGATGTTGGCAA  599
            ||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |
Sbjct  611  ACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCGA  670

Query  600  GAAACCAGATATGCCCATTTAG  621
            |||||||||| | |||||||||
Sbjct  671  GAAACCAGATTTTCCCATTTAG  692



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5