BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359476
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28510.1 | Symbols: BGLU24 | beta glucosidase 24 | chr5:1048... 691 0.0
AT1G66270.1 | Symbols: BGLU21 | Glycosyl hydrolase superfamily ... 348 5e-95
> AT5G28510.1 | Symbols: BGLU24 | beta glucosidase 24 | chr5:10481041-10484022
REVERSE LENGTH=1602
Length=1602
Score = 691 bits (374), Expect = 0.0
Identities = 443/477 (93%), Gaps = 2/477 (0%)
Strand=Plus/Plus
Query 251 GTATAATTCCGTTTGTGACTGTTTTTCATTGGGACACTCCACAATCTCTAGAAAATGAAT 310
||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 455 GTATAATTCCGTTCGTGACTGTTTTTCATTGGGACACGCCACAAACTCTAGAGAATGAAT 514
Query 311 ATGGCGGCTTCTTAAGCGCAAACATTGTGAAAGATTTTCGGGAGTATGCTGAGTATGTTT 370
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 515 ATGGGGGCTTCTTAAGCGCACACATTGTGAAAGATTTTCGGGAGTATGCTGAGTTTGTTT 574
Query 371 TCCAAGAGTATGGTGGAAAAGTGAAGCATTGGATCACTTTTAACGAGCCATGGGTTTTCG 430
|| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 575 TCAAAGAATATGGTGGAAAAGTTAAACATTGGATCACTTTTAACGAGCCATGGGTTTTCG 634
Query 431 CACACGCCGGTTATGACGTGGGTAAGAAAGCTCCAGGACGTTGTTCTCCTTACGCCAAGG 490
| || |||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 635 CGCATGCCGGTTATGACGTTGGAAAGAAAGCACCTGGACGTTGTTCTCCTTACGCCAAGG 694
Query 491 AAAG-AACCGTCAAGGGAGAATGCCTAGGTGGAAGATCAGGTTATGAGGCTTATCTAGTC 549
| | ||| ||||||||||| || ||||| ||| ||||||||||||||||||||||||||
Sbjct 695 -ACGAAACTGTCAAGGGAGATTGTCTAGGCGGACGATCAGGTTATGAGGCTTATCTAGTC 753
Query 550 AGTCACAACCTGCTCAACGCTCACGCAGAAGCCGTTGAAGCTTTTCGACAATGCGAAAAA 609
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 754 AGTCACAACCTCCTCAACGCTCATGCAGAAGCCGTTGAAGCTTTTCGACAATGTGAAAAA 813
Query 610 TGTAAAGGTGGGAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTT 669
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGTAAGGGTGGAAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTT 873
Query 670 AAGGATGCACAAAATGGTGCGACCGTTGACCGTGCACTTGACTTTATAATGGGATGG 726
|| |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 874 AAAGATGAACAAAGTGGTGCGACCATTGACCGTGCACTTGACTTTATAATGGGATGG 930
Score = 224 bits (121), Expect = 9e-58
Identities = 158/176 (90%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 1 ATGGCATTGC-AAAAGTTACCTCTCATGTCCATTGGGCTCCTTTTGCTCCTAATCATCGT 59
|||| ||||| |||| || ||||||||||| |||||||| |||| ||| |||||||||||
Sbjct 1 ATGGTATTGCAAAAACTT-CCTCTCATGTCTATTGGGCTGCTTTGGCTACTAATCATCGT 59
Query 60 CGGTTCTCCGGTAAATGCCGATGGACCGGTTTGCCCACCGACACCGTCCAACAAACTAAG 119
||| | | |||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 60 AGGTCCGCTGGTAAATGCCGATGGACCTGTTTGCCCACCGAAACCGTCGGACAAACTAAG 119
Query 120 CCGGGCACATTTTCCTGAAGGTTTCTTATTTGGCACAGCGACTGCGGCATATCAGG 175
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 120 CCGGGCACATTTTCCTAAAGGTTTTTTATTTGGCACAGCGACTGCGGCATATCAGG 175
> AT1G66270.1 | Symbols: BGLU21 | Glycosyl hydrolase superfamily
protein | chr1:24699990-24703041 REVERSE LENGTH=1741
Length=1741
Score = 348 bits (188), Expect = 5e-95
Identities = 395/488 (81%), Gaps = 42/488 (9%)
Strand=Plus/Plus
Query 251 GTATAATTCCGTTTGTGACTGTTTTTCATTGGGACACTCCACAATCTCTAGAAAATGAAT 310
||||| ||||||||||||||||||| |||||||||||||||||| | | ||| | ||||
Sbjct 492 GTATAGTTCCGTTTGTGACTGTTTTCCATTGGGACACTCCACAAGATTTGGAAGACGAAT 551
Query 311 ATGGCGGCTTCTTAAGCGC-AAACATTGTGAAAGATTTTCGGGAGTATGCTGAGTATGTT 369
||||||| ||||||||| | ||||||||||||||||||||| || ||||| || ||||||
Sbjct 552 ATGGCGGTTTCTTAAGC-CAAAACATTGTGAAAGATTTTCGAGAATATGCAGATTATGTT 610
Query 370 TTCCA-AGAGTATGGTGGAAAAGTGAAGCATTGGATCACTTTTAACGAGCCATGGGT-TT 427
|| || || || |||||||||||||| | ||||||||||| |||||||||||||| ||
Sbjct 611 TT-CACTGAATACGGTGGAAAAGTGAAAAACTGGATCACTTTCAACGAGCCATGGGTCTT 669
Query 428 TCGCACACGCCGGTTATGACGTGGGTAAGAAAGCTCCAGGACGTTGTTCTC-CTTACG-- 484
| || ||||| ||||| ||| | || |||||||| |||||||||||||||| | ||||
Sbjct 670 T-GCTCACGCAGGTTACGACTTAGGAAAGAAAGCACCAGGACGTTGTTCTCGC-TACGTT 727
Query 485 CCAAGGAAAGAACCGTCAAGGGAGAATGCCTAG-GTGGA-AGATCAGGTTATGAGGCTTA 542
|| ||| | || | || | || || | ||| | ||| ||| | ||||||||
Sbjct 728 CC-AGG-TTG---CG---A---AG-A--CCGAGAG-GGACA-ATCTGGTAAAGAGGCTTA 771
Query 543 TCTAGTCAGTCACAACCTGCTCAACGCTCACGCAGAAGCCGTTGAAGCTTTTCGACAATG 602
||||||||||||||| || |||||||||||||||||||| ||||||| ||||| | |
Sbjct 772 TCTAGTCAGTCACAATCTCCTCAACGCTCACGCAGAAGCTGTTGAAG-TTTTC--C---G 825
Query 603 CGAAAAATG-TAAAGGTGGGAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCAC 661
| |||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 826 C-CAAAAGGTTAAAGGTGGGAAAATCGGAATCGCACATAGTCCGGCTTGGTTCGAACCAC 884
Query 662 ATGA-CTTTAAGGATGCACAAA-ATGGTGCGACCGTT-GACCGTGCACTTGACTTTATAA 718
|||| ||| ||| || || || | | | | || ||| | ||||| ||||||||||||
Sbjct 885 ATGATCTTAAAG-ATTCA-AATGACGCTCCAACTGTTAG-CCGTGTACTTGACTTTATGT 941
Query 719 TGGGATGG 726
||||||||
Sbjct 942 TGGGATGG 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5