BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359489

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30920.1 | Symbols: ATCOQ3, EMB3002, COQ3 | coenzyme Q 3 | c...   658    0.0  


> AT2G30920.1 | Symbols: ATCOQ3, EMB3002, COQ3 | coenzyme Q 3 | 
chr2:13157133-13159932 REVERSE LENGTH=1353
Length=1353

 Score =  658 bits (356),  Expect = 0.0
 Identities = 386/401 (96%), Gaps = 0/401 (0%)
 Strand=Plus/Plus

Query  1     AAATGCTAGCGGATGAAGGCAGGAAGTTTGATGCTGTTCTCTCTTTAGAGGTCATCGAGC  60
             ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  677   AAAAGCTAGCGGATGAAGGCAGGAAGTTTGATGCTGTTCTTTCTTTAGAGGTCATCGAGC  736

Query  61    ATGTAGCCAACCCTGCAGAGTTCTGCAAGTCGTTGTCAGCATTGACCATCCCCAATGGGG  120
             ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct  737   ATGTAGCAAACCCTGCAGAGTTCTGTAAGTCGTTGTCAGCATTGACTATCCCCAACGGGG  796

Query  121   CTACAATACTTTCTACAGTTAATCGCACTATGCGAGCATATGCATCAACCATTGTTGGAG  180
             ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct  797   CTACAGTACTTTCTACAATCAATCGCACTATGCGAGCATATGCATCAACCATTGTTGGAG  856

Query  181   CAGAGTACATCCTACGTTGGCTTCCTATAGGCACACATCAATGGTCAAGTTTTGTAACTC  240
             |||||||||| |||||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct  857   CAGAGTACATTCTACGTTGGCTTCCTAAAGGCACACACCAGTGGTCAAGTTTTGTAACTC  916

Query  241   CTGAAGAACTGAGTATGATATTACAACGTGCTTCAGTCGATGTGAAAGAGATGGCTGGAT  300
             |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  917   CTGAAGAAATGAGTATGATATTACAACGTGCTTCAGTCGATGTGAAAGAGATAGCTGGAT  976

Query  301   TTGTGTACAACCCAATAACAGGAAGATGGTTATTGTCAGATGATATTAGTGTCAACTATA  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  977   TTGTGTACAACCCAATAACAGGAAGATGGTTATTGTCAGATGATATTAGTGTCAACTATA  1036

Query  361   TTGCTTATGGGACGAAAAGGAAGGATCTTGGAGACATATAA  401
             |||||||||||||||||||||||||||||||||||||||||
Sbjct  1037  TTGCTTATGGGACGAAAAGGAAGGATCTTGGAGACATATAA  1077



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18950941373


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5