BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359504
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61090.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 942 0.0
> AT5G61090.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:24574902-24577714 REVERSE
LENGTH=2103
Length=2103
Score = 942 bits (510), Expect = 0.0
Identities = 579/613 (94%), Gaps = 2/613 (0%)
Strand=Plus/Plus
Query 1 ATGGACATAGACACTGAATGCCTGACCCCAAGTGTGGCTCTGAAGCTAATTACAGAATCA 60
|||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1492 ATGGACTTAGACAATGAATGCCTGACCCCGCGTGTGGCTCTGAAGCTTATTACAGAATCA 1551
Query 61 CAAAACACTCCCTCAAGATCACCAGAGAAGGTGAACAGAGAAACAAGTTTACCTCCTGGT 120
||||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 1552 CAAAAAACTCCCTCAAGATCACCGGAGAAGGTGAAGGGAGAAGCAAGTGTACCTCCTGGT 1611
Query 121 TTCGAGAAGATATGGACACCACCTTTGGTGAAACTTAATATACAAGGAACTTCAAACCCT 180
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1612 TTCGAGAAGATATGGACACCACCCTTGGTGAAACTTAATATACAAGGAACATCAAACCCT 1671
Query 181 CTATCTGATCTATCCGGATCGGCTGGAATAGTGCGTGATCAATCAGGGAAGTGGGTGTTT 240
|| ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1672 CTGTCTGATCTAACCAGATCGGCTGGAATAGTGCGTGACCAATCAGGGAAGTGGGTGTTT 1731
Query 241 GGGTACATCAGGTGCCATAGGAGCATCCCTGAAGTCGCAGCTGGGCTTTTGGCTATATAC 300
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1732 GGGTACATCAGGTGCCATAAGAGCATCCCTGAAGTCGTAGCTGGGCTTTTGGCTATATAC 1791
Query 301 CATGGCCTGAAATTTCTGTGGGACAGCGGTTTCCGAAGAATCCACTTGGAGACAACAAGC 360
|| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CAAGGCCTCAAATATCTCTGGGACAGCGGTTTCCGAAGAATCCACTTGGAGACAACAAGC 1851
Query 361 TTTGAGATCATCAATGCTCTAACAACAAGATCGTCCCTGTTTTGTAAAAGGAAAACGCTT 420
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1852 TTTGAGATCATCAATGCTCTAACAACAAAATCGTCCCTGTTTTGTAAAAGTAAAACGCTT 1911
Query 421 CTGGG-GTCGTGCAAGGACATGATATTGAAGGAGTGGGAGTGTGACATTTACCATATCTC 479
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 CTAGGAG-CGTGCAAGGACATGATATTGAAGGAGTGGGAGTGTGACATTTACCATATCTC 1970
Query 480 CAAAGAACAGAACTCGTGTGCAGAATGGTTAGCAAAGAGATCAGAAGAACAGCCTCAAGA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CAAAGAACAGAACTCATGTGCAGAATGGTTAGCAAAGAGATCAGAAGAACAGCCTCAAGA 2030
Query 540 ATTAGTTTTCTTCGAATACCCTCCTCGTGGCCTTGTGGATCTTCTGGAGAAAGACCGCCT 599
|||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct 2031 ATTAGTTTTCTTTGAATACCCTCCTCGAGGCCTTATGGATTTTCTGGAGAAAGACCGCCT 2090
Query 600 TGCAGCTATATAG 612
||||||||| |||
Sbjct 2091 TGCAGCTATGTAG 2103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5